View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_34 (Length: 216)
Name: NF13782_high_34
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 9063729 - 9063930
Alignment:
| Q |
15 |
ctatcatgctaggttttgttgggtattccagcgttgtagcttgtgtggagaagccctctatctcaaaaagatcagaacttgaatcgctagctacatcttc |
114 |
Q |
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| T |
9063729 |
ctatcatgctaggttttgttgggtattccagcgttgtagcttgtgtggagaagccctctatctcaaaaagatcagaacttgaatcactagctacatcttc |
9063828 |
T |
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| Q |
115 |
atcatttacatttgactttggtaaacttgttggttgaataacatgcaaggaatcacgtacctcctcttccttttcttcttcatgatcatgatcatcatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9063829 |
atcatttacatttgactttggtaaacttgttggttgaaaaacatgcaaggaatcacgtacctcctcttccttttcttcttcatgatcatgatcatcatct |
9063928 |
T |
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| Q |
215 |
tc |
216 |
Q |
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|| |
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| T |
9063929 |
tc |
9063930 |
T |
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