View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13782_high_6 (Length: 442)

Name: NF13782_high_6
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13782_high_6
NF13782_high_6
[»] chr7 (8 HSPs)
chr7 (10-407)||(29206624-29207021)
chr7 (63-407)||(29158077-29158415)
chr7 (181-357)||(29161860-29162036)
chr7 (63-227)||(29144946-29145110)
chr7 (253-401)||(29153634-29153785)
chr7 (297-356)||(29145111-29145170)
chr7 (128-178)||(29153497-29153547)
chr7 (235-352)||(29209547-29209664)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 29206624 - 29207021
Alignment:
Q  10 agttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29206624 agttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaag 29206723  T
Q  110 atcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggagggattgattttgtgcaagggcagctatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29206724 atcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggaggaattgattttgtgcaagggcagctatt 29206823  T
Q  210 acagcatgctgttgttgtggattttacatcgtaattagcttcgccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaata 309  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |    
T  29206824 acagcatgctgttgttgtggattttacttcgtaagtagcttcaccattggagagcagttgagtgatgaaggatgatccgtcgaaacgagcatcaacaaca 29206923  T
Q  310 gttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcaactccattatcactatctctttctcact 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29206924 gttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcaccattgccttcttgttcatcatcaaatccattatcactatctctttctcact 29207021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 29158077 - 29158415
Alignment:
Q  63 atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca 162  Q
    ||||||||| | |||| |||||  |||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||  || ||||    
T  29158077 atagcagaagttagtgatatcatagcaacgacactgtggaggaaaagaccgtgtgcaaaggcaacttttgcaagctgagtgacatttttctttaacatca 29158176  T
Q  163 gcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattggaga 262  Q
    | ||| ||||| ||||| ||||||||| ||||||||||||||  || ||||||||||||||||||||||||      |  ||||||||| ||||||||||    
T  29158177 gtacactgacattgaggtgggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggattt------ggtattagcttcaccattggaga 29158270  T
Q  263 gcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatcattgc 362  Q
    |||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29158271 gcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgc 29158370  T
Q  363 cttcttgttcatcatcaactccattatcactatctctttctcact 407  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  29158371 cttcttgttcatcatcaacaccattatcactatctttttctcact 29158415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 181 - 357
Target Start/End: Original strand, 29161860 - 29162036
Alignment:
Q  181 gggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattggagagcagttgagtgatgaagg 280  Q
    |||| |||| |||||||  ||||||||||||||||| |||||||||||||||| |||||||||  |||||| ||||| ||||  | |||||| |||||||    
T  29161860 gggaatgatcttgtgcattggcagctattacagcatcctgttgttgtggatttgacatcgtaagcagcttcaccatttgagattacttgagttatgaagg 29161959  T
Q  281 atgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatc 357  Q
    ||| | | ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  29161960 atgttggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaaccaataaagctaacttcatcatc 29162036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 29144946 - 29145110
Alignment:
Q  63 atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca 162  Q
    ||||||||| |||||| |||||| |||  | ||||||||||||| |||| |||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  29144946 atagcagaagtcagtgatatcagcgcagtgacactgtggaggaatagattttgtgcaaagacagcttttgcaagctgagtgacatgtttctccaatatca 29145045  T
Q  163 gcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgt 227  Q
    | ||| || || ||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  29145046 gtacaatggcattgaggagggattgattttgtgcaagggcaggaatcacagcatgctgttgttgt 29145110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 29153634 - 29153785
Alignment:
Q  253 ccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttca 352  Q
    ||||| |||| || |||||| |||||||||| |   ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  29153634 ccatttgagatcacttgagttatgaaggatgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccagcaaagctaacttca 29153733  T
Q  353 tcatcattgccttcttgttc---atcatcaactccattatcactatctcttt 401  Q
    ||| ||||||||||||||||    |||||||||||||| | |||||||||||    
T  29153734 tcaccattgccttcttgttcttgttcatcaactccattgttactatctcttt 29153785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 29145111 - 29145170
Alignment:
Q  297 agcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcat 356  Q
    ||||||||| || ||||| ||||||| ||| |||||||||||||||||||| ||||||||    
T  29145111 agcatcaaccatggttgatgtgaagctcaagaggaaaaccaacaaagctaatttcatcat 29145170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 29153497 - 29153547
Alignment:
Q  128 ttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgag 178  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |||||||||    
T  29153497 ttttgcaagctgagtgacatgtttttccaacatcagcacagcgacactgag 29153547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 29209547 - 29209664
Alignment:
Q  235 acatcgtaattagcttcgccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaa 334  Q
    ||||| ||| || |||| ||||||||||||| | ||||| |||| | || |   || ||||||||||||||||||||||  ||||||| ||| || ||||    
T  29209547 acatcataagtatcttcaccattggagagcactcgagtggtgaatggtgttgaatcaaaacgagcatcaacaatagttgcggtgaagcacaagagcaaaa 29209646  T
Q  335 ccaacaaagctaacttca 352  Q
     ||||| || ||||||||    
T  29209647 gcaacacagataacttca 29209664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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