View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_7 (Length: 428)
Name: NF13782_high_7
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 34095247 - 34095645
Alignment:
| Q |
19 |
taagaggtgtaggagttgaacagttagagaagcagaggatagcggcattgatgaaaaaacactttgatcttcctcatcaacaacaacaggttttgaagta |
118 |
Q |
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| T |
34095247 |
taagaggtgtaggagttgaacagttagagaagcagaggatagcggcattgatgaaaaaacactttgatcttcctcatcaac---aacaggttttgaagta |
34095343 |
T |
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| Q |
119 |
tggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggt |
218 |
Q |
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| T |
34095344 |
tggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggttggt |
34095443 |
T |
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| Q |
219 |
tctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcacaatcagaatcagaataacattaacaacagggttgttg |
318 |
Q |
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| T |
34095444 |
tctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcagaatcagaatcagaataacattaaaaacagggttgttg |
34095543 |
T |
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| Q |
319 |
ttggtggcggtaactatggatctggttcactactttgtagtagtagaaacccttttgagccttctaaagagctctcttcaatgccaaatcttcttctctc |
418 |
Q |
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| T |
34095544 |
ttggtggtggtaactatggatctggttcactactttgtagtagtagaaacccttttgagccttctaaagagctctcttcaatgccaaatcttcatcactc |
34095643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 12294624 - 12294560
Alignment:
| Q |
110 |
tttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatga |
174 |
Q |
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| T |
12294624 |
tttgaggtatggtgcattatcatcaaatgtgtcatttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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