View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_1 (Length: 524)
Name: NF13782_low_1
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 87 - 509
Target Start/End: Complemental strand, 42530256 - 42529839
Alignment:
| Q |
87 |
atataaatatggtgatatagttatggggtttgaaattgacatttgatttatgaattaataaagcttttgtgtacgtaacaatgtgtatgaccccacactg |
186 |
Q |
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| T |
42530256 |
atataaatatggtgatatagttatggggtttgaaattgacatttgatttatgaattaataaagcttttgtgtacgtgacaatgtgtatgaccccacactg |
42530157 |
T |
|
| Q |
187 |
caatttcatgagtgtgtcgtcttaaggtattgtttttattgagttggccttgtttgttggacatacttgaggggaatgcactattctctattcttgctct |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
42530156 |
caatttcatgagtgtgtcgtcttaaggtattgtttttattgagttggccttgtttgttggacatacttgagag-aatgcactattctctattcttgctct |
42530058 |
T |
|
| Q |
287 |
aaggaacaagataagtgcaaaaatacaagtagatatacctatgaagttcacaaccataattaaattcaccaannnnnnncatctcgcttctttctaaccc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
42530057 |
aaggaacaagataagtgcaaaaatacaagtagatatacctatgaagttcacaaccataa----attcaccaatatttttcatctcgcttctttctaaccc |
42529962 |
T |
|
| Q |
387 |
aacaattatcctttgtactttgttgttgtaaagttgtgcccacattctaattggtcaactaggtagtatatatcagagaatctagtattgtcactcatgt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529961 |
aacaattatcctttgtactttgttgttgtaaagttgtgcccacattctaattggtcaactaggtagtatatatcagagaatctagtattgtcactcatgt |
42529862 |
T |
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| Q |
487 |
ccatacgtcaacaaaatatatat |
509 |
Q |
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| T |
42529861 |
ccatacgtcaacaaattatatat |
42529839 |
T |
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