View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_10 (Length: 375)
Name: NF13782_low_10
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 29403685 - 29403340
Alignment:
| Q |
17 |
acaatactattttattttatttcagcaccacaaaattaaccattgcatgagttcttttacttttattcatgagttatctttttcttttgggtgagagcct |
116 |
Q |
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| T |
29403685 |
acaatactattttattttatttcagaaccacaaaattaaccattgcatgagttcttttacttttattcatgagttatctttttcttttgggtgagagcct |
29403586 |
T |
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| Q |
117 |
tcattagaaaacacaaaacaagaaagaaacnnnnnnnnnnnntgaagaagttaggaagccttggatacattgagtccccggagattgagagaggtgacaa |
216 |
Q |
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| T |
29403585 |
tcattagaaaacacaaaacaagaaagaaac--aaaaaaaaaatgaagaagttaggaagccttggatacattgggtccccggagattgagagaggtgacaa |
29403488 |
T |
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| Q |
217 |
tcacaagtcttctttacaagcaatcaaattttttgatttagttctgnnnnnnnnnttagcaataag---nnnnnnnntatatattgagaaagtaattaga |
313 |
Q |
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| T |
29403487 |
tcacaagttttctttacaagcaatcaaagtttttgatttagttctgaaaaaaaa---agcaataagaaaaaaaaaatcatatattgagaaagtaattaga |
29403391 |
T |
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| Q |
314 |
gaaagaaatggtgaatttaatagaaagaagagttgaaatcatggctgatga |
364 |
Q |
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| T |
29403390 |
gaaagaaatggtgaatttaatagaaagaagagttgaaatcatggctgatga |
29403340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 29403099 - 29403071
Alignment:
| Q |
321 |
atggtgaatttaatagaaagaagagttga |
349 |
Q |
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| T |
29403099 |
atggtgaatttaatagaaagaagagttga |
29403071 |
T |
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