View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13782_low_11 (Length: 368)
Name: NF13782_low_11
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_11 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 4903921 - 4903567
Alignment:
| Q |
14 |
caaaaaccacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaata |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903921 |
caaaaaccatctccaagacaacaccttaacagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaata |
4903822 |
T |
|
| Q |
114 |
ctccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4903821 |
ctccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggag |
4903722 |
T |
|
| Q |
214 |
gaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaatt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
4903721 |
gaattaaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatcttcaatcgaatt |
4903622 |
T |
|
| Q |
314 |
attgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagca |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4903621 |
attgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagca |
4903567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 1557320 - 1557161
Alignment:
| Q |
91 |
tgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattc |
190 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | ||||||||||| | || ||||| | || | ||||||||| | || | ||| |||||||||| |
|
|
| T |
1557320 |
tgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatctttttattgacaacagctccaatccaacattc |
1557221 |
T |
|
| Q |
191 |
ccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagctt |
250 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
1557220 |
ccacataataaacagatttggggggattaaaaaattaaagtccagccagtccataagctt |
1557161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 12123866 - 12123902
Alignment:
| Q |
76 |
cattgttgaaaattctgtcattcctcgctttccaaat |
112 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
12123866 |
cattattgaaaattctgtcattcctagctttccaaat |
12123902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 22153636 - 22153990
Alignment:
| Q |
14 |
caaaaaccacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaata |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22153636 |
caaaaatcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaata |
22153735 |
T |
|
| Q |
114 |
ctccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggag |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
22153736 |
ctccaaattgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagag |
22153835 |
T |
|
| Q |
214 |
gaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaatt |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
22153836 |
ggattaaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaatt |
22153935 |
T |
|
| Q |
314 |
attgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagca |
368 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22153936 |
gttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagca |
22153990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 22209551 - 22209905
Alignment:
| Q |
14 |
caaaaaccacctccaagacaacaccttaacagattccaacaactcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaata |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22209551 |
caaaaatcacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaata |
22209650 |
T |
|
| Q |
114 |
ctccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggag |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
22209651 |
ctccaaattgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagag |
22209750 |
T |
|
| Q |
214 |
gaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaatt |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
22209751 |
ggattaaaaaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaatt |
22209850 |
T |
|
| Q |
314 |
attgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagca |
368 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22209851 |
gttgcaccaaacacactgaagagagctatccggtgggagcgagttccttatagca |
22209905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 41450828 - 41450779
Alignment:
| Q |
176 |
accattccaacattcccacataataaacagattaggaggaattaaaaaat |
225 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
41450828 |
accattccaacattgccaaagaataaacaaatttggaggaattaaaaaat |
41450779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 53562303 - 53562135
Alignment:
| Q |
76 |
cattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactc |
175 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| | |||| |||| | || ||| ||||| |||| | |
|
|
| T |
53562303 |
cattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattctaacacctttacgggtcttattatttaaaacagc |
53562204 |
T |
|
| Q |
176 |
accattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccat |
244 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || ||||||| ||||||||| |||||||| ||||| |
|
|
| T |
53562203 |
tccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
53562135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 38185505 - 38185584
Alignment:
| Q |
179 |
attccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactccaga |
258 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || ||||||| |||||| ||||||| |||||||||||||| || ||||| |
|
|
| T |
38185505 |
attccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccataagctcacgccaga |
38185584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 256
Target Start/End: Original strand, 34821358 - 34821538
Alignment:
| Q |
76 |
cattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactc |
175 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| || |||||||| || || |||||||| | || | ||| | || | ||||||||| || | | |
|
|
| T |
34821358 |
cattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagcctcactcccttacgaatctttttattgtgaaccgc |
34821457 |
T |
|
| Q |
176 |
accattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactcca |
256 |
Q |
| |
|
|||||||||||| | |||||| ||||||| ||| ||||| |||| || ||||| || ||||||||||| ||||||||||| |
|
|
| T |
34821458 |
accattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccactccatgagcttactcca |
34821538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University