View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_16 (Length: 328)
Name: NF13782_low_16
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 14576851 - 14576541
Alignment:
| Q |
18 |
ctaacttgctcatcattttcggacaacttaaacttacgaaaatttctcttactaatttcatcttcagaagagattggggtttctagcttttcatagtctc |
117 |
Q |
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| T |
14576851 |
ctaacttgctcatcattttcggacaacttaaacttacgaaaatttctcttactaatttcatctttagaagagattggggtttctagattttcctagtctc |
14576752 |
T |
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| Q |
118 |
nnnnnnnatcttcaaaatacgacacaattgttgcaacaaggttccttgatgattcaacaccttccaaatcaatctaaccttcttaaattggtatagcaag |
217 |
Q |
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| T |
14576751 |
tttttttatcttcaaaataagacacaattgttgcaacaaggttccttgatgattcaacaccttccaaatcaatctaaccttcttaaattggtagagcaag |
14576652 |
T |
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| Q |
218 |
agttgaattcaaagtctggtctggcaagagagatgtccattatgaatcttcatcatacacactatcattaaggacaatcatcaacttcagcacaacattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14576651 |
agttgaattcaaagtctggtctggcaagagagatgtccattatgaatcttcatcatacacactatcattaaggacaatcatcaacttcagcacaaccttt |
14576552 |
T |
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| Q |
318 |
cccttccactt |
328 |
Q |
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| T |
14576551 |
cccttccactt |
14576541 |
T |
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