View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_17 (Length: 323)
Name: NF13782_low_17
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 26436664 - 26436370
Alignment:
| Q |
13 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttag |
112 |
Q |
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| T |
26436664 |
cagagatgagagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttcgtgccctcggaatcaacatgtttcg |
26436565 |
T |
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| Q |
113 |
ccaattctcccagaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
212 |
Q |
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| T |
26436564 |
ccaattctcccggaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaa |
26436465 |
T |
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| Q |
213 |
cacctaacagtgtatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatgtggaggaaacaccaaaccaaatatacatttc |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
26436464 |
cacctaacagtgcatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatatggagtaaacaccaaaccaaatatacttttc |
26436370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 34662044 - 34662128
Alignment:
| Q |
52 |
atctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttagccaattctcccagaagaacaagcctaa |
139 |
Q |
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| T |
34662044 |
atctaagaacttgtaaacttcgtt---acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaa |
34662128 |
T |
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