View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_18 (Length: 322)
Name: NF13782_low_18
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 23247513 - 23247223
Alignment:
| Q |
19 |
gtggcgccttcctataccagcaaccgccaagataaaagatattcaaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgact |
118 |
Q |
| |
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||||||||||||||| |||||||| || |||||||||||||||||||||||| | |||| |||||| | ||||| ||||||||||||||||||||| |
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| T |
23247513 |
gtggcgccttcctattccagcaacttccgcaataaaagatattcaaaaggcagctacaaaagcggccgaagcttttagaccagacaatactttaatgact |
23247414 |
T |
|
| Q |
119 |
aacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagt |
218 |
Q |
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||||||||||| | | ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||| || |||||||||||||||||||||||| |
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| T |
23247413 |
aacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagt |
23247314 |
T |
|
| Q |
219 |
tgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaagatgatga |
309 |
Q |
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|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23247313 |
tgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatgagtatgacgatattcatgtacaagattttcaagatgatga |
23247223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 23257901 - 23257608
Alignment:
| Q |
19 |
gtggcgccttcctataccagcaaccgccaagataaaagatattcaaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgact |
118 |
Q |
| |
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||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||| |||||||||| | |
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| T |
23257901 |
gtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgatt |
23257802 |
T |
|
| Q |
119 |
aacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagt |
218 |
Q |
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| T |
23257801 |
aatgatattgacaccgtagtacctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaat |
23257702 |
T |
|
| Q |
219 |
tgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatga |
309 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
23257701 |
tgttgaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatga |
23257608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 23251925 - 23251635
Alignment:
| Q |
19 |
gtggcgccttcctataccagcaaccgccaagataaaagatattcaaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgact |
118 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||||||||||| | |||| |||||| | ||||| |||||||||||||||||||| |
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| T |
23251925 |
gtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactttaatgacc |
23251826 |
T |
|
| Q |
119 |
aacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagt |
218 |
Q |
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| | ||||| | || | || ||| ||||| ||| |||| ||||||| |||| |||| ||||| ||||||||| ||| |||||||||||||||||| |
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| T |
23251825 |
agtgacattgacaccgttgtagctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagag---gaagtgttgaatatgccagagt |
23251729 |
T |
|
| Q |
219 |
tgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
23251728 |
tgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatga |
23251635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 23266456 - 23266169
Alignment:
| Q |
19 |
gtggcgccttcctataccagcaaccgccaagataaaagatattcaaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgact |
118 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||||||||||||||||||| | |||| |||||| | ||||| |||||||||||| |||||| | |
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| T |
23266456 |
gtggcggcttcctattccagcaacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgatt |
23266357 |
T |
|
| Q |
119 |
aacaatattgaaattgtcgaagatgtcgtcgccacaaaggacctgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagt |
218 |
Q |
| |
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| ||| ||||| | ||| | || ||| |||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
23266356 |
accaacattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaagaagaaga------ggaaatgttgaatatgccggagt |
23266263 |
T |
|
| Q |
219 |
tgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatg---agtatgaagatattcatgtacaagattttcaagatgatga |
309 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| | ||||| |||||||||||||| |
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| T |
23266262 |
tttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
23266169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 23289729 - 23289602
Alignment:
| Q |
162 |
tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga |
261 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
23289729 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttga |
23289630 |
T |
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| Q |
262 |
gtatcatgagtatgaagatattcatgtacaa |
292 |
Q |
| |
|
| ||||||||||||||| || |||||||| |
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| T |
23289629 |
g---catgagtatgaagattttgatgtacaa |
23289602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
204 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga |
303 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||| |||| |||||| |||||||||| ||||| |||||||| |
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| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatgaatatgaaaatattcatgttcaagactttcaaga |
23391075 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
23391074 |
t |
23391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 162 - 306
Target Start/End: Complemental strand, 23283389 - 23283248
Alignment:
| Q |
162 |
tgaataggttttgtgtggaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttga |
261 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||| ||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| | || |
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| T |
23283389 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatagtatgga |
23283290 |
T |
|
| Q |
262 |
gtatcatgagtatgaagatattcatgtacaagattttcaagatga |
306 |
Q |
| |
|
| |||||||||||| || || || ||||||| ||||||||||| |
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|
| T |
23283289 |
g---catgagtatgaaaattttgatttacaagactttcaagatga |
23283248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 23593092 - 23593009
Alignment:
| Q |
179 |
gaagtagaagaagagcaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgag |
262 |
Q |
| |
|
|||| |||| ||||| ||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
23593092 |
gaagaagaaaaagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag |
23593009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 306
Target Start/End: Complemental strand, 23582948 - 23582849
Alignment:
| Q |
204 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga |
303 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| ||| |||| |||||||| |
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|
| T |
23582948 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga |
23582852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 306
Target Start/End: Complemental strand, 23586831 - 23586732
Alignment:
| Q |
204 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgagtatcatgagtatgaagatattcatgtacaagattttcaaga |
303 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| | |||| |||||||| || ||||| ||| |||| |||||||| |
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|
| T |
23586831 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatgagtatcaatatattaatg---aagactttcaaga |
23586735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 23633870 - 23633835
Alignment:
| Q |
223 |
gaggaatatggcactaatgtcccctacacatagctt |
258 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
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|
| T |
23633870 |
gaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 23283541 - 23283472
Alignment:
| Q |
52 |
aaaagatattcaaaaggcagctgctgaagctgccgaaacatttaggccagacaatactttaatgactaac |
121 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| ||||| | || || |||||||| ||||||||||||||| |
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|
| T |
23283541 |
aaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaac |
23283472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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