View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_2 (Length: 465)
Name: NF13782_low_2
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 52720326 - 52720596
Alignment:
| Q |
18 |
gtttgcaattgaaaaatgatcccagacaaaaattaatacattaatcaaactaatgagattagatcagaaacataacatgtgcttaggttccttataattt |
117 |
Q |
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| T |
52720326 |
gtttgcaattgaaaaatgatcccagacaaaaattaatacattaatcaaactaatgagattagatcagaaacataacatgtgcttaggttccttataattt |
52720425 |
T |
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| Q |
118 |
aatcaagatgatatgaggatcaacaagcac----cgtataggattaatttaaaaaggaaagcaaattattacctacccatcaacaaaaggtggatagagt |
213 |
Q |
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| T |
52720426 |
aatcaagatgatatgaggatcaacaagcaccgcgcgtataggattaatttaaaaaggaaagcaaattattacctacccatcaacgaaaggtggatagagt |
52720525 |
T |
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| Q |
214 |
tacccatattgagttcgtatcgatcaaaattattcatatgcccactatataaactatatctataatataaa |
284 |
Q |
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| T |
52720526 |
tacccatattgagttcgcatcaatcaaaatcattcatatgcccgctatataaactatatatataatataaa |
52720596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 276 - 455
Target Start/End: Original strand, 52722159 - 52722338
Alignment:
| Q |
276 |
taatataaaccgtgaaagacatataaaatagttttgattggtgtcaactgaacatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
375 |
Q |
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| T |
52722159 |
taatataaaccgtaaaagacaaatgaaatagttttgattggtgtcaactgaatatatataattctattcatcttttgttgatgggtaatgtagttaccgc |
52722258 |
T |
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| Q |
376 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
455 |
Q |
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| T |
52722259 |
aaataaagaatacgtgggttctttctacattaattaattgtaagattaattaacatgcatggataatggattggtctctg |
52722338 |
T |
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