View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_20 (Length: 308)
Name: NF13782_low_20
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 47712372 - 47712536
Alignment:
| Q |
144 |
cttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttgggaactacactatttaattcatgaatacacatgttgagtccattag |
243 |
Q |
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| T |
47712372 |
cttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttgggaactacactatttaattcatgaatacacatattgagtccattag |
47712471 |
T |
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| Q |
244 |
ttctacacaaccctatgaacatgatacactttaatttggagatacaaatatttatgctacctctc |
308 |
Q |
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| T |
47712472 |
ttctacacaaccctatgaacatgatacactttaatttggagatacaaatatttatgctacctctc |
47712536 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 47712288 - 47712367
Alignment:
| Q |
19 |
ggtgtgctcttcccttttactggatctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttgg |
98 |
Q |
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| T |
47712288 |
ggtgtgctcttcccttttgctgtatctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttgg |
47712367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 101 - 292
Target Start/End: Original strand, 32886450 - 32886645
Alignment:
| Q |
101 |
aaaccgtgtgctaatgctcacatctttggactccttacatctacttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttggga |
200 |
Q |
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| T |
32886450 |
aaactgtgtgctaatgctcacatctttggactccttacatctacttcacttctgtttgaaaggaacaatgttcccaatatggaggacaagaattttggga |
32886549 |
T |
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| Q |
201 |
actacactatttaattcatgaata----cacatgttgagtccattagttctacacaaccctatgaacatgatacactttaatttggagatacaaat |
292 |
Q |
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| T |
32886550 |
actacactatttagttcatgaataaaaggagatattgagtccattagttctacacaaccctatcaacatgataaactttaatttggagatacaaat |
32886645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 32886134 - 32886206
Alignment:
| Q |
32 |
cttttactggatctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttggggaaac |
104 |
Q |
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| T |
32886134 |
cttttgctgtatctgcctatgcttcaaccgaaggaagaatttgcaaaccatttaatccattacttggagaaac |
32886206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 24481754 - 24481823
Alignment:
| Q |
32 |
cttttactggatctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttgggga |
101 |
Q |
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| T |
24481754 |
cttttgctgtatctgcctatgcttcaactgatgggagaaattgtaaaccgtttaatccattactagggga |
24481823 |
T |
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