View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_21 (Length: 299)
Name: NF13782_low_21
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 45512532 - 45512258
Alignment:
| Q |
19 |
gtatccgttccaccatagaatgggatcttc----atgataagattggtaagtctcattgcgaattaagaaattggacatacttattttttcatcaaacaa |
114 |
Q |
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| T |
45512532 |
gtatccgttccaccatagaatgggatcttcgatcatgataagattggtaagtctcattgcgaattaagaaattggacatacttatttcttcatcaaacaa |
45512433 |
T |
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| Q |
115 |
ttgcaggaaaaatggaagtgatgttcatataaaaacaaatattgagaatggaagannnnnnngttgttcttcaaacggtg---attaaacggagttagtg |
211 |
Q |
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| T |
45512432 |
ttgcaggaaaaatggaagtgctgttcatataaaaacaaatattgagaatggaaggtttttttgttgttcttcaaacggtgattattaaacggagttagtg |
45512333 |
T |
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| Q |
212 |
tgaggggaggtcaaagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaacttagggtggttagt |
286 |
Q |
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| T |
45512332 |
tgaggggaggtcaaagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaacttagggtggttagt |
45512258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 35744272 - 35744023
Alignment:
| Q |
32 |
catagaatgggatcttcatgataagattggtaagtctcattgcgaattaagaaattggacatacttattttttcatcaaacaattgca--------ggaa |
123 |
Q |
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| T |
35744272 |
catagaatgggatcttcatgacaagattggtaagtctcattgcgaattaagaaaatggacat-cttatttcttcatcaagcaatggcacttcaaacggaa |
35744174 |
T |
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| Q |
124 |
aaatggaagtgatgttcatataaaaacaaat-attgagaatggaagannnnnnngttgttcttcaaacggtgattaaacggagttagtgtgaggggaggt |
222 |
Q |
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| T |
35744173 |
aaatggaagtgatgtttatgtaaaaaaaattgatcgagaatggaaggtttttcttttgttcttcaaagggtgattaaacagaggtagtgtgaggggaggt |
35744074 |
T |
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| Q |
223 |
caaagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaact |
273 |
Q |
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| T |
35744073 |
caatgtctttttaaaaaatagaggggaggtgagtgatatttggttagaact |
35744023 |
T |
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