View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_25 (Length: 278)
Name: NF13782_low_25
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 42224101 - 42224355
Alignment:
| Q |
7 |
tagattattctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtctt |
106 |
Q |
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| T |
42224101 |
tagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtctt |
42224200 |
T |
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| Q |
107 |
gaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttg |
206 |
Q |
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| T |
42224201 |
gaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttg |
42224300 |
T |
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| Q |
207 |
aaggaatttgacctgtgagattattgacagaaaagtctaaagtctgtagattatg |
261 |
Q |
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| T |
42224301 |
aaggaatttgacctgtgagattattgacagaaaagtctaaactctgtagattatg |
42224355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 42211885 - 42212139
Alignment:
| Q |
7 |
tagattattctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtctt |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211885 |
tagattgttctgtgtgagggataagaaaactaaggaagataagttgaagatagaagtaggaagcttgccggtgaagttattctctgagagttgaagtctt |
42211984 |
T |
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| Q |
107 |
gaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211985 |
gaaagattgtggagattgcccaattcacttggaatttcaccctcaagcatgttccttgccatggaaagattcttgagagataagagattgccaaaggttg |
42212084 |
T |
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| Q |
207 |
aaggaatttgacctgtgagattattgacagaaaagtctaaagtctgtagattatg |
261 |
Q |
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| T |
42212085 |
aaggaattttaccagtgagattattgacagaaaagtctaaactttgtagattatg |
42212139 |
T |
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