View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13782_low_27 (Length: 272)
Name: NF13782_low_27
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 12050104 - 12049847
Alignment:
| Q |
1 |
tatctattcaatgctgataaaaatattgaccctgatttttcgcaacacaataaaataacacataaatctgacgtgtgatacattagaattaggcataaag |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12050104 |
tatctattcaatgctaataaaaatattgaccatgattttttgcaacacaataaaataacacataaatctgacgtgtgatacattagaattaggcataaag |
12050005 |
T |
|
| Q |
101 |
aagattccacgtagaacccatcaattttccccagttgccaccaccacccacgtgaccacgttcctgtatataaaacaaacatttcccttataaatatcac |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12050004 |
aagattccacgtataacccatcaattttccccagttgccaccaccacccacgtgaccacgttcctgtatataaaacaaacatttcccttataaatatcac |
12049905 |
T |
|
| Q |
201 |
accattattcctaaaccttattcatttccattcatatttatcaccacaaacatcttct |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12049904 |
accattattcctaaaccttattcatttccattcatatttatcaccacaaacatcttct |
12049847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University