View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_29 (Length: 265)
Name: NF13782_low_29
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 9700864 - 9701091
Alignment:
| Q |
19 |
tacaaaataaaattcactgctccgaaaaatttcaaaaacactaaagtttgaaaacaattcgattatcaatatttttatactttaagactcacaagggcgg |
118 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9700864 |
tacaaaataaaactcactgctccaaaaaatttcaaaaactctaaagtttgaaaacaattcgattatcaatattgttatactttaagactcacaagggcga |
9700963 |
T |
|
| Q |
119 |
ccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaaatcacactttaaagagaagaaaaaggggagaaata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700964 |
ccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaaatcacactttaaagagaagaaaaaggggagaaata |
9701063 |
T |
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| Q |
219 |
catctacaatgacaatgggttatgtgcat |
247 |
Q |
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|||| ||||||||||| |||||||||||| |
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| T |
9701064 |
catc-acaatgacaataggttatgtgcat |
9701091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 13567103 - 13567330
Alignment:
| Q |
19 |
tacaaaataaaattcactgctccgaaaaatttcaaaaacactaaagtttgaaaacaattcgattatcaatatttttatactttaagactcacaagggcgg |
118 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13567103 |
tacaaaataaaactcactgctccaaaaaatttcaaaaactctaaagtttgaaaacaattcgattatcaatattgttatactttaagactcacaagggcga |
13567202 |
T |
|
| Q |
119 |
ccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaatagaacaccaaaatcacactttaaagagaagaaaaaggggagaaata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13567203 |
ccaacaacacatgacatcagtgacgaaaatcaaaactcaacactcttagccaacagaacaccaaaatcacactttaaagagaagaaaaaggggagaaata |
13567302 |
T |
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| Q |
219 |
catctacaatgacaatgggttatgtgcat |
247 |
Q |
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|||| ||||||||||| |||||||||||| |
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| T |
13567303 |
catc-acaatgacaataggttatgtgcat |
13567330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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