View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_3 (Length: 460)
Name: NF13782_low_3
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 188 - 443
Target Start/End: Original strand, 33197731 - 33197989
Alignment:
| Q |
188 |
aaaataaactaacaatttcattcaaaaccaacaattaattt-ataaaaaagactatgattttgaa-aattgaacaaa-ttgtatgccaaatagaatcaac |
284 |
Q |
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| T |
33197731 |
aaaataaactaacaatttcattcaaaaccaacaatttattttataaaaaagactatgattttgaacaattgaacaaaattgcatgccaaatagaatcaac |
33197830 |
T |
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| Q |
285 |
ttacaaaaaattgaaatgaatgaagaaaatagagagtaacctgaagaagtggaaaacgagagaagatgagaggtaagagtcctttgaaaaaagagattat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33197831 |
ttacaaaaaattgaaatgaatgaagaaaatagagagtaacctgaagaagtggaaaacgagagaagatgagaggtaagagtcctttgaaaagagagattat |
33197930 |
T |
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| Q |
385 |
tgccattggtgcggagaatatgagaatgagaaagtgcaaaagcttgagttactcttcta |
443 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33197931 |
tgccattggtgcggagagtatgagaatgagaaagtgcaaaagcttgagttactcttcta |
33197989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33197516 - 33197716
Alignment:
| Q |
1 |
ttcactattgcttcacatgtagcaaagtttatgactgttttttagcaacaagttctcccacagtttgaaaaattacaaacacaaagttttgaactttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33197516 |
ttcactattgcttcacatgtagcaaagtttatgactgttttttagcaacaagttctcccacagtttgaaaaattacaaacacaaagttttgaactt-att |
33197614 |
T |
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| Q |
101 |
acaatttatgaaaccctttggtctaattcagctatatattcatcatcactatgttgagttggataaatactctaattcatgtaacttaaaataaactaac |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33197615 |
acaatttatgaaaccctttgctctaattcagctatatattcatcatcactatgttgagttggataaatactctaattcatgtaacttaaaataaactaac |
33197714 |
T |
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| Q |
201 |
aa |
202 |
Q |
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|| |
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| T |
33197715 |
aa |
33197716 |
T |
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