View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_33 (Length: 242)
Name: NF13782_low_33
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 33714220 - 33714021
Alignment:
| Q |
15 |
cacagacacaaacatcgaacacctcacatacaagtctacaccagtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtggcatgtcacaa |
114 |
Q |
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| T |
33714220 |
cacaaacacaaacatcgaacacctcacatacaagtctacaccagtagtaatttgagaagatgacattatcgaatgtaatcagaagtgtggcatgtcacaa |
33714121 |
T |
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| Q |
115 |
aatattctgataagttcatattactgcattatccacttaaaaagttataaaattttgttatcaatattcaaataacaattctaaataagaagaagaagaa |
214 |
Q |
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| T |
33714120 |
actattctgataagttcatattactgcattatccacttaaaaagttatcaaactttgttatcaatatacaaataacaattctaaataagaagaagaagaa |
33714021 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 7512206 - 7512251
Alignment:
| Q |
58 |
gtagtaatttgagaagacgacattatcgaatgtaatcagaagtgtg |
103 |
Q |
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| T |
7512206 |
gtagtaatttgagaaaatgacattattgaatgtaatcagatgtgtg |
7512251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 7512449 - 7512489
Alignment:
| Q |
57 |
agtagtaatttgagaagacgacattatcgaatgtaatcaga |
97 |
Q |
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| T |
7512449 |
agtagtaatttgagaaaatgacattattgaatgtaatcaga |
7512489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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