View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13782_low_36 (Length: 219)
Name: NF13782_low_36
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_36 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0018 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 38464082 - 38464300
Alignment:
| Q |
1 |
gtgctaacatttgcctatcaaagaaaataaaaaattggtttgccacaggtttttagtaacaatcaagcatatgttataggaatttagcgttatataatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38464082 |
gtgctaacatttgcctatcaaagaaaataaaaaattggtttgctacaggtttttagtaacaatcaagcatatgttataggaatttagcgttacataatta |
38464181 |
T |
|
| Q |
101 |
gtttattttaaataacattttgcttgtgttattttaatcttttagcctcgagggttgtatttaaacttggccttgtgcctcatttcaaatcaatcaatat |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38464182 |
gtttattttaaataacatttagcttgtgtcattttaatcttttagcctcgagggttgtatttaaacttggccttgtgcctcatttgaaatcaatcaatat |
38464281 |
T |
|
| Q |
201 |
ttcaacaattatcttattc |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38464282 |
ttcaacaattatcttattc |
38464300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 38450305 - 38450449
Alignment:
| Q |
75 |
tataggaatttagcgttatataattagtttattttaaataacattttgcttgtgttattttaatcttttagcctcgagggttgtatttaaacttggcctt |
174 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||||||||||| | | |||||||||| ||||||| |||||||| |||||||||||| || | || |
|
|
| T |
38450305 |
tataggaataaagcgttagataattaatttattttaaataacatttaccgtatgttattttactcttttaacctcgaggattgtatttaaacatgacatt |
38450404 |
T |
|
| Q |
175 |
gtgcctcatttcaaatcaatcaatatttcaacaattatcttattc |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38450405 |
gtgcctcatttgaaatcaatcaatatttcaacaattatcttattc |
38450449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 6646797 - 6646729
Alignment:
| Q |
139 |
cttttagcctcgagggttgtatttaaacttggccttgtgcctcatttcaaatcaatcaatatttcaacaa |
208 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| |||||| ||| | |||| |||||||||| |
|
|
| T |
6646797 |
cttttagccttgagggt-gtatttaaacttggccttgtgcttcatttgcaatgagtcaacatttcaacaa |
6646729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 34748851 - 34748992
Alignment:
| Q |
74 |
ttataggaatttagcgttatataattagtttattttaaataacattttgcttgtgttattttaatcttttagcctcgagggttgtatttaaacttggcct |
173 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||| |||||| |||| ||| ||| |||||| ||||||||||| |||||||||||||||||||| || |
|
|
| T |
34748851 |
ttataggaataaagtgttagataattagtttattt-aaataatatttaccttatgtcattttactcttttagccttgagggttgtatttaaacttgacca |
34748949 |
T |
|
| Q |
174 |
tgtgcctcatttcaaatcaatcaat-atttcaacaattatctt |
215 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
34748950 |
tgtgcctcatttctaatcaatcaatcatttcaacaattatctt |
34748992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 26371219 - 26371112
Alignment:
| Q |
103 |
ttattttaaataacattttgcttgtgttattttaatcttttagcctcgagggttgtatttaaacttggccttgtgcctcatttcaaatcaatcaatattt |
202 |
Q |
| |
|
|||||||||||| ||||| ||| ||| |||||| ||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||| || |
|
|
| T |
26371219 |
ttattttaaatagcatttaccttatgtcattttactcttttagccttgagggttgtat----acttggccttctgcctcatttgcaatcaatcaata-tt |
26371125 |
T |
|
| Q |
203 |
caacaattatctt |
215 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26371124 |
caacaattatctt |
26371112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 187838 - 187723
Alignment:
| Q |
103 |
ttattttaaataacattttgcttgtgttattttaatcttttagcctcgagggttgtatttaaacttggccttgtgcctcatttcaaatcaatcaat-att |
201 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| | |||||| || |||||| ||||||||||||||| ||||||||||||| ||||||| || ||| |
|
|
| T |
187838 |
ttattttaaataatatttaccttatgttattttact-ttttagtcttgagggtagtatttaaacttggc-ttgtgcctcatttgcaatcaattaaacatt |
187741 |
T |
|
| Q |
202 |
tcaacaattatcttattc |
219 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
187740 |
tcaacaattatcttattc |
187723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 39624043 - 39624118
Alignment:
| Q |
141 |
tttagcctcgagggttgtatttaaacttggccttgtgcctcatttcaaatcaatc-aatatttcaacaattatctt |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||| || ||||||||||||||||| |
|
|
| T |
39624043 |
tttagcctcgagggttgtatttaaaattggtcttgtaccttatttgaaatcaatcaaacatttcaacaattatctt |
39624118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 3666961 - 3667024
Alignment:
| Q |
153 |
ggttgtatttaaacttggccttgtgcctcatttca-aatcaatcaatatttcaacaattatctt |
215 |
Q |
| |
|
|||||||||||||| | | ||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3666961 |
ggttgtatttaaacattgtcttgtacctcatttgggaatcaatcaatatttcaacaattatctt |
3667024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 55287211 - 55287156
Alignment:
| Q |
161 |
ttaaacttggccttgtgcctcatttca-aatcaatcaatatttcaacaattatctt |
215 |
Q |
| |
|
|||||| ||| ||||| |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
55287211 |
ttaaacatggtcttgtacctcatttgagaatcaatcaatatttcaacaattatctt |
55287156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University