View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_5 (Length: 444)
Name: NF13782_low_5
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_5 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 23962848 - 23963261
Alignment:
| Q |
11 |
cacagaagacatacatatgtgaaattgaaattgatcgcaggaatggaagttgtaagttcattggaaaaggatagtttgaatttatcggctcgaatcaatc |
110 |
Q |
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| T |
23962848 |
cacaaaagacatacgtatgtgaaattgaaattgatcgcatgaatgaaagttgtaagttcattggaaaaagatggtttgaatttatcggctcgactcaatc |
23962947 |
T |
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| Q |
111 |
tttagtttggtcctttctaatgtttaattttgaaattccaacacgaagattgtatgtttgtcccgctgagttgttataaaatatttgtagtaactatgtt |
210 |
Q |
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| T |
23962948 |
tttagttgggtcctttctaatgtttaattttgaaattccaacacgaagattgtatgtttgtcccgctgagttgttataaaatatttgtagtaactatgtt |
23963047 |
T |
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| Q |
211 |
ttaaattagaaatggtatcgataagagtaatgtattatttaaagttgttgtaaatttnnnnnnnttaaataatgttttatcataatcaatttcattgtag |
310 |
Q |
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| T |
23963048 |
ttaaattagaaatggtatcgataagagtaatgtattatttaaagttattgtaaattgaaaaaaattaaataatgttttatcataatcaatttcatcgtag |
23963147 |
T |
|
| Q |
311 |
tttatcatatttaaaaaggaagaacatacaatatgttatcgctactatatcctattgtgaggtgatatgcaggtattaaaaggtagaaatatactaaaaa |
410 |
Q |
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| T |
23963148 |
tttatcatatttaaaaaggaagaacatacaatatgttatcgctactatatcctat--tgaggtgatatgcaggtattaaaaggtagaaatatact--aaa |
23963243 |
T |
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| Q |
411 |
taattgtaaggtttgatg |
428 |
Q |
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| T |
23963244 |
taattgtaaggtttgatg |
23963261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 132696 - 132280
Alignment:
| Q |
11 |
cacagaagacatacatatgtgaaattgaaattgatcgcaggaatggaagttgtaagttcattggaaaaggatagtttgaatttatcggctcgaatcaatc |
110 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
132696 |
cacagaagacatacgtatctgaaattgaaattgatcgcaagaatggaagatgtaagttcattggaaaaggatggttttaatttatcgtctcgaatcaatc |
132597 |
T |
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| Q |
111 |
tttagtttggtcctttctaatgtttaattttgaaattccaacacgaagattgtatgtttgtcccgctgagttgttataaaatatttgtagtaactatgtt |
210 |
Q |
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| T |
132596 |
tttagctgggtcctttctaatgtttaattttgaaattccaacacgaagattgtatgtttgttccgctgagttgttataaaatatttgtagtaactatgtt |
132497 |
T |
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| Q |
211 |
ttaaattagaaatggtatcgataagagtaatgtattatttaaagttgttgtaaatttnnnnnnnttaaataatgttttatcataatcaatttcattgtag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
132496 |
ttaaattagaaatggtatcgataagagtaatgtattttttaaagttgttgtaaattgaaaagaattaaattatgttttatcataatcaatttcattgtag |
132397 |
T |
|
| Q |
311 |
tttatcatatttaaaaaggaagaacatacaatatgttatcgctactatatcctattgtgagg-tgatatgcaggtattaaaaggtagaaatatactaaaa |
409 |
Q |
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| T |
132396 |
tttattatatttaaacaggaagaacatacaatatgttatcgctactatatcctattgtgaggttgatatgcaggcattaaaaggtagaaatatatt--aa |
132299 |
T |
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| Q |
410 |
ataattgtaaggtttgatg |
428 |
Q |
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| T |
132298 |
ataattttaaggtttgatg |
132280 |
T |
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