View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13782_low_7 (Length: 442)

Name: NF13782_low_7
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13782_low_7
NF13782_low_7
[»] chr7 (8 HSPs)
chr7 (10-407)||(29206624-29207021)
chr7 (63-407)||(29158077-29158415)
chr7 (181-357)||(29161860-29162036)
chr7 (63-227)||(29144946-29145110)
chr7 (253-401)||(29153634-29153785)
chr7 (297-356)||(29145111-29145170)
chr7 (128-178)||(29153497-29153547)
chr7 (235-352)||(29209547-29209664)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 29206624 - 29207021
Alignment:
Q  10 agttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29206624 agttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaag 29206723  T
Q  110 atcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggagggattgattttgtgcaagggcagctatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29206724 atcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggaggaattgattttgtgcaagggcagctatt 29206823  T
Q  210 acagcatgctgttgttgtggattttacatcgtaattagcttcgccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaata 309  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |    
T  29206824 acagcatgctgttgttgtggattttacttcgtaagtagcttcaccattggagagcagttgagtgatgaaggatgatccgtcgaaacgagcatcaacaaca 29206923  T
Q  310 gttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcaactccattatcactatctctttctcact 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29206924 gttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcaccattgccttcttgttcatcatcaaatccattatcactatctctttctcact 29207021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 29158077 - 29158415
Alignment:
Q  63 atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca 162  Q
    ||||||||| | |||| |||||  |||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||  || ||||    
T  29158077 atagcagaagttagtgatatcatagcaacgacactgtggaggaaaagaccgtgtgcaaaggcaacttttgcaagctgagtgacatttttctttaacatca 29158176  T
Q  163 gcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattggaga 262  Q
    | ||| ||||| ||||| ||||||||| ||||||||||||||  || ||||||||||||||||||||||||      |  ||||||||| ||||||||||    
T  29158177 gtacactgacattgaggtgggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggattt------ggtattagcttcaccattggaga 29158270  T
Q  263 gcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatcattgc 362  Q
    |||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29158271 gcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgc 29158370  T
Q  363 cttcttgttcatcatcaactccattatcactatctctttctcact 407  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  29158371 cttcttgttcatcatcaacaccattatcactatctttttctcact 29158415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 181 - 357
Target Start/End: Original strand, 29161860 - 29162036
Alignment:
Q  181 gggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattggagagcagttgagtgatgaagg 280  Q
    |||| |||| |||||||  ||||||||||||||||| |||||||||||||||| |||||||||  |||||| ||||| ||||  | |||||| |||||||    
T  29161860 gggaatgatcttgtgcattggcagctattacagcatcctgttgttgtggatttgacatcgtaagcagcttcaccatttgagattacttgagttatgaagg 29161959  T
Q  281 atgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcatc 357  Q
    ||| | | ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  29161960 atgttggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaaccaataaagctaacttcatcatc 29162036  T

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Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 29144946 - 29145110
Alignment:
Q  63 atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca 162  Q
    ||||||||| |||||| |||||| |||  | ||||||||||||| |||| |||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  29144946 atagcagaagtcagtgatatcagcgcagtgacactgtggaggaatagattttgtgcaaagacagcttttgcaagctgagtgacatgtttctccaatatca 29145045  T
Q  163 gcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgt 227  Q
    | ||| || || ||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  29145046 gtacaatggcattgaggagggattgattttgtgcaagggcaggaatcacagcatgctgttgttgt 29145110  T

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Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 29153634 - 29153785
Alignment:
Q  253 ccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttca 352  Q
    ||||| |||| || |||||| |||||||||| |   ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  29153634 ccatttgagatcacttgagttatgaaggatgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccagcaaagctaacttca 29153733  T
Q  353 tcatcattgccttcttgttc---atcatcaactccattatcactatctcttt 401  Q
    ||| ||||||||||||||||    |||||||||||||| | |||||||||||    
T  29153734 tcaccattgccttcttgttcttgttcatcaactccattgttactatctcttt 29153785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 29145111 - 29145170
Alignment:
Q  297 agcatcaacaatagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcat 356  Q
    ||||||||| || ||||| ||||||| ||| |||||||||||||||||||| ||||||||    
T  29145111 agcatcaaccatggttgatgtgaagctcaagaggaaaaccaacaaagctaatttcatcat 29145170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 29153497 - 29153547
Alignment:
Q  128 ttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgag 178  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |||||||||    
T  29153497 ttttgcaagctgagtgacatgtttttccaacatcagcacagcgacactgag 29153547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 29209547 - 29209664
Alignment:
Q  235 acatcgtaattagcttcgccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaa 334  Q
    ||||| ||| || |||| ||||||||||||| | ||||| |||| | || |   || ||||||||||||||||||||||  ||||||| ||| || ||||    
T  29209547 acatcataagtatcttcaccattggagagcactcgagtggtgaatggtgttgaatcaaaacgagcatcaacaatagttgcggtgaagcacaagagcaaaa 29209646  T
Q  335 ccaacaaagctaacttca 352  Q
     ||||| || ||||||||    
T  29209647 gcaacacagataacttca 29209664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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