View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_low_9 (Length: 422)
Name: NF13782_low_9
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_low_9 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 43381561 - 43381141
Alignment:
| Q |
12 |
atgacttcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaagt---------tatagaatagaataaaaaagaatgacgttgg |
102 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43381561 |
atgaattcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaagtgatttatcttatagaatagaataaaaaagaatgacgttgg |
43381462 |
T |
|
| Q |
103 |
atttttcacaggaatgcaaaccgaagtggtttatcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaag |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43381461 |
atttttcacaggaatgcaaaccgaagtggtttatcttgtatacttctatttctaataatcatccctggggtgttaattggttcatatccaatacggcaag |
43381362 |
T |
|
| Q |
203 |
aaaatagaacagaaaataaatgattttagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgattcaa |
302 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43381361 |
aaaatagaacagaaaataaatgattctagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgagtcaa |
43381262 |
T |
|
| Q |
303 |
tatataatcatcatgtattataaactgcaaact------------aatcatcatcttcat-----aaagaaaatatttgataaatactccaaagagtttt |
385 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43381261 |
tatataatcatcatgtattataaactgcaaagtaatttcctgaagaatcatcatcttcataaagaaaagaaaatatttgataaatactccaaagagtttt |
43381162 |
T |
|
| Q |
386 |
gaatatgataataaactaaac |
406 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43381161 |
gaatatgataataaactaaac |
43381141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 126 - 381
Target Start/End: Complemental strand, 25871011 - 25870744
Alignment:
| Q |
126 |
aagtggtttatcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatga |
225 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25871011 |
aagtgatttatcttatatacttctatttctaataatcatccctgcgttgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatga |
25870912 |
T |
|
| Q |
226 |
ttttagatactaaaatattcaattggaaaataaatggaacatcctctttcacacaaaatccagtccaaatgattcaatatataatcatcatgtattataa |
325 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870911 |
ttctagatactaaaatattcaattggaaaataaatggaacttcctctttcacacaaaatccagtccaaatgattcaatatataatcatcatgtattataa |
25870812 |
T |
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| Q |
326 |
actgcaaact------------aatcatcatcttcataaagaaaatatttgataaatactccaaagag |
381 |
Q |
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| T |
25870811 |
actgcaaactaatttcctgaagaatcatcatcttcataaagaaaatatttgataaatactccaaagag |
25870744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 25871067 - 25871008
Alignment:
| Q |
12 |
atgacttcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaagt |
71 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25871067 |
atgaattcaaaataaatactcagcaaataatctaacattggtcctgcatataatacaagt |
25871008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 3591 - 3706
Alignment:
| Q |
136 |
tcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatac |
235 |
Q |
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|||||||||||| ||||||||||||| ||| || || |||||| |||||| ||||||||||| || ||||||||||||| ||||| ||||||||||||| |
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| T |
3591 |
tcttatatacttctatttctaataataatcactaggatgttaactggttcttatccaatacgaaaa-aaaatagaacagataataagtgattttagatac |
3689 |
T |
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| Q |
236 |
taaaatattcaattgga |
252 |
Q |
| |
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|||||| |||||||||| |
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| T |
3690 |
taaaattttcaattgga |
3706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 20350998 - 20351099
Alignment:
| Q |
136 |
tcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaagaaaatagaacagaaaat-aaatgattttagata |
234 |
Q |
| |
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|||||||||||| ||||||||||||| ||| || || |||||| | |||| ||||||| |||| || ||||||||||||| ||| ||||||||||||||| |
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| T |
20350998 |
tcttatatacttctatttctaataataatcactaggatgttaactagttcttatccaacacggaaaaaaaatagaacagataataaaatgattttagata |
20351097 |
T |
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| Q |
235 |
ct |
236 |
Q |
| |
|
|| |
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| T |
20351098 |
ct |
20351099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 30402011 - 30401892
Alignment:
| Q |
136 |
tcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaagaaaa---tagaacagaaaataaatgattttaga |
232 |
Q |
| |
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|||||||||||| |||||||||||| ||| || || |||||| |||||| |||||||||| || |||| |||||||| ||||| |||||||||| |
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| T |
30402011 |
tcttatatacttctatttctaataaaaatcactaggatgttaactggttcttatccaatacaaaaaaaaaaaaatagaacagctaataagtgattttaga |
30401912 |
T |
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| Q |
233 |
tactaaaatattcaattgga |
252 |
Q |
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||||||||| |||||||||| |
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| T |
30401911 |
tactaaaatgttcaattgga |
30401892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 5004513 - 5004457
Alignment:
| Q |
180 |
tggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatact |
236 |
Q |
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|||||| ||||||||| | || ||||||||||||| ||||| |||||||||||||| |
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| T |
5004513 |
tggttcttatccaatatgaaaaaaaaatagaacagataataagtgattttagatact |
5004457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 47480801 - 47480731
Alignment:
| Q |
182 |
gttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
252 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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|
| T |
47480801 |
gttcttatccaatacgaaaaaaaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
47480731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 53031177 - 53031096
Alignment:
| Q |
133 |
ttatcttatatacttgtatttctaataatcatccctggggtgttaattggttcatatccaatacggcaagaaaatagaacag |
214 |
Q |
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||||||||| || || ||||||||||||| ||| ||| | | |||| |||||| ||||||||||| || ||||||||||||| |
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| T |
53031177 |
ttatcttatgtaattctatttctaataataatcactgcgatcttaactggttcttatccaatacgacaggaaaatagaacag |
53031096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 29334699 - 29334770
Alignment:
| Q |
180 |
tggttcatatccaatacggcaagaaaatagaacagaaaataaatgattttagatactaaaatattcaattgga |
252 |
Q |
| |
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|||||| ||||||||||| || ||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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| T |
29334699 |
tggttcttatccaatacgaaaa-aaaatagaacaaataataagtgattttagatactaaaatgttcaattgga |
29334770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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