View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_high_10 (Length: 408)
Name: NF13783_high_10
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 30238487 - 30238089
Alignment:
| Q |
7 |
aagtcttgcttgaaaatttatcacttgtgaatatcaatttgtgtcacnnnnnnnn--acaatagttatttatcaaattaattaatggtcattgaatttgt |
104 |
Q |
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| T |
30238487 |
aagtcttgcttgaaaatttatcacttgtgaatatcaatttgtgtcactttttttattacaatagttatttatcaaattaattaatggtcattgaatttgt |
30238388 |
T |
|
| Q |
105 |
aatcagattcgagcttattatgaaagaaaagcactagcacaatcactgaatgataccaaaacagcagtgcaacaacttcacaaattagcaagtnnnnnnn |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238387 |
aatcagattcgagcttattatgaaagaaaagcactagcacaatcactgaatgataccaaaacagcagtgcaacaacttcacaaattagcaagttgtgttg |
30238288 |
T |
|
| Q |
205 |
nnnnnnnnataataataattgtgacccttttggtgatggaagttgctacaatgaagataatattgttctgtatcacacaaactgttttaataggagttgc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238287 |
tgtgtgtgataataataattgtgacccttttggtgatggaagttgctacaatgaagataatattgttctgtatcacacaaactgttttaataggagttgc |
30238188 |
T |
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| Q |
305 |
attccaaggcacttgcaaaactgtcgtggaagctatcatctttgtcttcatcatgcacccttttgacattggagaccgttgtgtcattgatgatgtcca |
403 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30238187 |
attccaaggcacttgcaaaactgtcttggaagctatcatctttgtcttcatcatgcacccttttgacattggagaccgttgtgtcattgatggtgtcca |
30238089 |
T |
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