View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_high_11 (Length: 403)
Name: NF13783_high_11
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 25702674 - 25703059
Alignment:
| Q |
18 |
aggttattcttctgttgacgctcccaaaagttaaccaatccatcagaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacag |
117 |
Q |
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| T |
25702674 |
aggttattcttctgttgatgctcccaaaagttaaccaatccatcagaagaaccgcaataaataatcgttgatgaatcgttaaccgtcaaagccgtcacag |
25702773 |
T |
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| Q |
118 |
cgttttcttgtttcaacaaaatcctctccaaaacatgcttcgttttcttaccttttccgtcggtgtctctcctccacatcttcaccgttccatcggctga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702774 |
cgttttcttgtttcaacaaaatcctctccaaaacatgcttcgttttcttcccttttccgtcggtgtctctcctccacatcttcaccgttccatcggctga |
25702873 |
T |
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| Q |
218 |
gccggtgaaaacataggtttgaaatgctgcaactacagcgttcactgcatcatcatgagctataatcgattccatacacttgaaatccgtaacgcgccaa |
317 |
Q |
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| T |
25702874 |
gccggtgaaaacataggtttgaaatgctgcaaccacagcgttcactgcatcatcatgagctataatcgattccatacacttgaaatccgtaacgcgccaa |
25702973 |
T |
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| Q |
318 |
actttgagagttttatcccacgaacctgaatacaataacccttcttcttggtccaaactcagactcgaaacagcgtcgaaatgctt |
403 |
Q |
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| T |
25702974 |
actttgagagttttatcccacgaacctgaatacaacaacccttcttcttgatccaaactcagactcgaaacagcgtcgaaatgctt |
25703059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 6485581 - 6485620
Alignment:
| Q |
39 |
tcccaaaagttaaccaatccatcagaagaaccgcaataaa |
78 |
Q |
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| T |
6485581 |
tcccaaaagttaaccaatccatcagaagcaccacaataaa |
6485620 |
T |
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