View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_high_13 (Length: 358)
Name: NF13783_high_13
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 135 - 342
Target Start/End: Original strand, 7815111 - 7815318
Alignment:
| Q |
135 |
taagtctggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttggacttcacttcacgtttcattcg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7815111 |
taagtctggagttttgaaacaagctgaaagtataacattaccagatttgatctcaataacaaaggtcaagttatttggacttcacttcacgtttcattcg |
7815210 |
T |
|
| Q |
235 |
tgacatcattgaaggctctttctcaagccttagaactagacttcgggctttctgtgtattactaccacttgatgactttacaagtgggtaatgatgacga |
334 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
7815211 |
tgatgtcattgaaggctctttctcgagccttagaactagacttcgggccttctatatattactaccacttgatgactttacaagtggataatgatcacga |
7815310 |
T |
|
| Q |
335 |
ggtagaat |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
7815311 |
ggtagaat |
7815318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 7811121 - 7811155
Alignment:
| Q |
7 |
agcagagaaaataaatttccaaaacaaagacttag |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7811121 |
agcagagaaaataaatttccaaaacaaagacttag |
7811155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 31027675 - 31027601
Alignment:
| Q |
141 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttggact |
215 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31027675 |
tggagttttgtaaccagctgaaagaataacattacctgatttgatctcaagaacataggtcaagttatttggact |
31027601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 33801821 - 33801891
Alignment:
| Q |
141 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
211 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
33801821 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33801891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 33806303 - 33806373
Alignment:
| Q |
141 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
211 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
33806303 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33806373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 33812001 - 33811931
Alignment:
| Q |
141 |
tggagttttgaaacaagctgaaagtttaacattaccagatttgatctcaataacacaggtcaagttatttg |
211 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
33812001 |
tggagttttgaaaccagctgaaagaacaacatcaccagatttgatctcaagaacataggtcaagttatttg |
33811931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University