View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_high_15 (Length: 347)
Name: NF13783_high_15
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 9788974 - 9788658
Alignment:
| Q |
16 |
atattactaaacttatgccaaacctgaatacaattatttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaagaa |
115 |
Q |
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| T |
9788974 |
atattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaagaa |
9788875 |
T |
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| Q |
116 |
agagctttttagagtaaagtaaggatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788874 |
agagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaa |
9788775 |
T |
|
| Q |
216 |
aaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
9788774 |
aaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttggaca |
9788675 |
T |
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| Q |
316 |
gaattttggttggaatt |
332 |
Q |
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||||||||||||||||| |
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| T |
9788674 |
gaattttggttggaatt |
9788658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 139 - 332
Target Start/End: Original strand, 3587547 - 3587739
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaat-aaaa |
237 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
3587547 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggtttcaaagaaataaaaa |
3587646 |
T |
|
| Q |
238 |
agcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatt |
332 |
Q |
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| T |
3587647 |
accttattcttccttatgtgtgtgtatatat--attaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaatt |
3587739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 44505350 - 44505542
Alignment:
| Q |
140 |
atttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaag |
239 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
44505350 |
atttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgttagagaaaaaatggttttaaagaaataaaaac |
44505449 |
T |
|
| Q |
240 |
cttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatt |
332 |
Q |
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| T |
44505450 |
cttattcttccttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaatt |
44505542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10013746 - 10013647
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
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|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10013746 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10013647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10020887 - 10020788
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
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|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10020887 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 10013631 - 10013525
Alignment:
| Q |
226 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
325 |
Q |
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||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
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| T |
10013631 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10013532 |
T |
|
| Q |
326 |
tggaatt |
332 |
Q |
| |
|
||||||| |
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| T |
10013531 |
tggaatt |
10013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 10020772 - 10020666
Alignment:
| Q |
226 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
325 |
Q |
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||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
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| T |
10020772 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10020673 |
T |
|
| Q |
326 |
tggaatt |
332 |
Q |
| |
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||||||| |
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|
| T |
10020672 |
tggaatt |
10020666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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