View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_high_36 (Length: 227)

Name: NF13783_high_36
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_high_36
NF13783_high_36
[»] chr7 (14 HSPs)
chr7 (7-227)||(22885732-22885952)
chr7 (27-208)||(22840211-22840394)
chr7 (25-227)||(22805447-22805653)
chr7 (25-227)||(22815165-22815371)
chr7 (25-227)||(22898401-22898607)
chr7 (29-227)||(22876054-22876256)
chr7 (29-227)||(22889430-22889632)
chr7 (25-183)||(22809828-22809988)
chr7 (25-208)||(22880723-22880908)
chr7 (25-227)||(22894082-22894288)
chr7 (25-208)||(22831190-22831375)
chr7 (25-227)||(22842290-22842508)
chr7 (25-121)||(22858665-22858763)
chr7 (76-206)||(22913829-22913959)
[»] chr1 (1 HSPs)
chr1 (25-227)||(21150370-21150576)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 22885952 - 22885732
Alignment:
Q  7 atttatatcttgatggcaatgctttctatccaaatcctatagttttcaaaaacactcagtgaaagtgtgtcttctttctcaactacttttttatttgcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  22885952 atttatatcttgatggcaatgctttctatccaaatcctatagttttcaaaaacactcagtgaaagtgtgtcttctttctcaactaattctttatttgcta 22885853  T
Q  107 taaaatcttaatatccaactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22885852 taaaatcttaatatccaactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtct 22885753  T
Q  207 ctaacaattccaacaatggaa 227  Q
    |||||||||||||||||||||    
T  22885752 ctaacaattccaacaatggaa 22885732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 22840394 - 22840211
Alignment:
Q  27 gctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatccaa 124  Q
    ||||||||||||||||||||||||||||||||||||  ||| | |||||| ||||||||||||||||||||| ||||| | |||||||||| ||||||||    
T  22840394 gctttctatccaaatcctatagttttcaaaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcatatccaa 22840295  T
Q  125 ctcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctct 208  Q
    ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |  | |||||||||||||||    
T  22840294 ctcttagtggccatggaattgttttcgttatttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctct 22840211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 22805653 - 22805447
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||| | || |||||||    
T  22805653 atgctttctatccaaatccaatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatcc 22805554  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaac 220  Q
    | ||  || |||||||||||||||||||||| |||| || ||||||||||||||||||||||||| | || ||||||||||||||  |||  ||||||||    
T  22805553 accttttactggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctctttaatgattccaac 22805454  T
Q  221 aatggaa 227  Q
    |||||||    
T  22805453 aatggaa 22805447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 22815371 - 22815165
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| | ||||| |||| | || |||||||    
T  22815371 atgctttctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtcttctttctcaactacttttgtgtttgcaataagacctcaatatcc 22815272  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaac 220  Q
    | ||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |  | ||||||||||||||  |||| ||||||||    
T  22815271 accttttagtggccaaggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaacgattccaac 22815172  T
Q  221 aatggaa 227  Q
    |||||||    
T  22815171 aatggaa 22815165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 22898607 - 22898401
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacactc--agtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||||||||||||||||||||||||||| ||||||   | || |||||| ||||||||||||||||||||| | ||||| |||| | || |||||||    
T  22898607 atgctttctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatcc 22898508  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaac 220  Q
    ||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||  | ||||||||||||||  |||||| ||||||    
T  22898507 aactcttagtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaac 22898408  T
Q  221 aatggaa 227  Q
    |||||||    
T  22898407 aatggaa 22898401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 22876256 - 22876054
Alignment:
Q  29 tttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatccaact 126  Q
    ||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||||||||||| ||||||| |||| | || |||||||||||    
T  22876256 tttctatccaaatcctatagttttcaaaaacacttccaatggaagtgtgtcttctttctcaactacttttgtatttgccataagacctcaatatccaact 22876157  T
Q  127 catagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaacaatg 224  Q
      ||||||  ||||||||||||||||| |||| |||||||||||||||||||| ||||||| |  | ||||||||||||||  ||||||||| |||||||    
T  22876156 attagtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatg 22876057  T
Q  225 gaa 227  Q
    |||    
T  22876056 gaa 22876054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 22889632 - 22889430
Alignment:
Q  29 tttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatccaact 126  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||| | || ||||| ||| |    
T  22889632 tttctatccaaatccaatagttttcaaaaacacttccagtgaaagcgtgtcttctttctcaactacttttttatttgccataatacctcaatatgcaaat 22889533  T
Q  127 catagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaacaatg 224  Q
      | |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |  | ||||||||||||||  |||| ||||||||| ||    
T  22889532 attggtggccatggaattgtttttgttatttctccaacaaaagggctaccagattcactaccaagtcaataccttggtctctttaacgattccaacagtg 22889433  T
Q  225 gaa 227  Q
    |||    
T  22889432 gaa 22889430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 22809988 - 22809828
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||| |||| | || |||||||    
T  22809988 atgctttctatccaaatcctgtagttttcaaaaacactatcagtgaaagtgtatcttctttctcaactacttttgtatttgccataagacctcaatatcc 22809889  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattca 183  Q
    ||||| ||||  |||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  22809888 aactcttagttcccatggaattgtatttgttgtttcacctacaaaagggctgccaaattca 22809828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 22880908 - 22880723
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||||| ||||||||||||||||||| ||||||| || ||||||   ||| |    
T  22880908 atgctttctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtattctttctcaactacttttgtatttgccatcaaatctaggtatac 22880809  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctct 208  Q
    | ||  | ||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||| |  | |||||||||||||||    
T  22880808 agctacttgtggccatggacttgtttttgttgtttcaccaacaaaagggctaccaaattcgctaccaagtaaataccttggtctct 22880723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 22894288 - 22894082
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    |||||||||||||||| ||||||||||| || ||||||  || || |||||| ||||| ||||||||||||||| ||||||| |||| |  | ||  |||    
T  22894288 atgctttctatccaaaccctatagttttgaagaacacttccaatggaagtgtttcttcattctcaactacttttgtatttgccataagacatcaaggtcc 22894189  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaac 220  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||  || |||||||||||||  | || ||||||||    
T  22894188 aacttatagtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactccaaggttcataccttggtctctttgacgattccaac 22894089  T
Q  221 aatggaa 227  Q
    |||||||    
T  22894088 aatggaa 22894082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 22831375 - 22831190
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacactcag--tgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    |||||||||||||||||| ||||||||| |||||||||  |  || ||||||||| |||||||||||||||||| ||||| | ||||||||    |||||    
T  22831375 atgctttctatccaaatcatatagtttttaaaaacacttcgaatgcaagtgtgtcatctttctcaactacttttgtatttaccataaaatccatgtatcc 22831276  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctct 208  Q
    | ||  ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | || ||||| |||||||||    
T  22831275 atctattagtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctct 22831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 22842508 - 22842290
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacactc--agtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||| |||||||| || ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||    
T  22842508 atgctttatatccaaaaccaatagttttcaaaaacacttctagtgaaagtgtgtcttctttctcaactacttttttatttgccataaaatctccagatcc 22842409  T
Q  123 ------aactcatagtggccatggaattgttt--ttgtt----atttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--t 208  Q
          ||||| ||||||||| || |||||||  |||||     |||||||||||||||||| |||||||||||||| |  | ||||||||||||||  |    
T  22842408 agaactaactcttagtggccacgggattgttttgttgtttcaactttcacctacaaaagggcaaccaaattcactaccaggtcaataccttggtctcttt 22842309  T
Q  209 aacaattccaacaatggaa 227  Q
    |||||||||||||||||||    
T  22842308 aacaattccaacaatggaa 22842290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 22858763 - 22858665
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacactc--agtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatc 121  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  22858763 atgctttctatccaaatcctatagttttcaaaaacacttctagtgaaactgtgtcttctttctcaactacttttttatttgccataaaatctgaatatc 22858665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 22913959 - 22913829
Alignment:
Q  76 tcttctttctcaactacttttttatttgctataaaatcttaatatccaactcatagtggccatggaattgtttttgttatttcacctacaaaagggctac 175  Q
    ||||||||||| ||||||||| | ||||| ||||||||| | | ||| | || ||||||||||||||||||||||||| |||| || ||||||||| |||    
T  22913959 tcttctttctctactacttttgtttttgccataaaatctgagtttcctaatcttagtggccatggaattgtttttgttctttctccaacaaaagggttac 22913860  T
Q  176 caaattcactacaatattaataccttggtct 206  Q
    |||||||||||| |  | |||||||||||||    
T  22913859 caaattcactaccaagtcaataccttggtct 22913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 21150370 - 21150576
Alignment:
Q  25 atgctttctatccaaatcctatagttttcaaaaacact--cagtgaaagtgtgtcttctttctcaactacttttttatttgctataaaatcttaatatcc 122  Q
    ||||||||||||||||||||||||||||| ||||||||  | | |||||||||| |||||| |||||||||||| ||||||| |||| | || |||||||    
T  21150370 atgctttctatccaaatcctatagttttcgaaaacacttccggcgaaagtgtgttttctttttcaactacttttgtatttgccataagacctcaatatcc 21150469  T
Q  123 aactcatagtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaac 220  Q
    ||||| | |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |    ||||||||||||||  |||||||||||||    
T  21150470 aactcttggtggccatggaattgtttttgttatttctcctacaaaagagctaccaaattcactaccaacacaataccttggtctctttaacaattccaac 21150569  T
Q  221 aatggaa 227  Q
    |||||||    
T  21150570 aatggaa 21150576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University