View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_high_7 (Length: 449)
Name: NF13783_high_7
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_7 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 33028226 - 33027792
Alignment:
| Q |
1 |
tgatttagttatactctcgttatttcaacatatgaacgaaacttattttattattnnnnnnncatatatttaattgggttatagtaattatctagagtga |
100 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33028226 |
tgatttatttatactctcgttatttcaacatttgaacgaaacttattttattattgaaaaaacatatatttaattgggttatagtaattatctagagtga |
33028127 |
T |
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| Q |
101 |
aacccgcgacaaaagaacaaactcttcttcgtttattatcacaacacgttccttcttccctcatttttgtatatttagaagacaatttcagaaatcatat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33028126 |
aacccgcgacaaaagaacaaactcttattcgtttattatcacaacacattccttcttccctcatttttgtatatttagaagacaatttcagaaatcatat |
33028027 |
T |
|
| Q |
201 |
acttgaaccaagcaccatccattgtcgatatctgtgagatgaggccatcaagccatggagaattcctctcttccttgttgtcttactattactagttagt |
300 |
Q |
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| T |
33028026 |
gcttgaaccaagcaccatccattgtcgatatctgtgagatgaggccatcaagccatggagaattcctctcttccttgttgtcttactattactagttagt |
33027927 |
T |
|
| Q |
301 |
gcttatagataggcttgaggtagttaaattgtaactaacttcctcatttgtactattactcattatcatcaatacaagagttccgtagctttctctcatc |
400 |
Q |
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| T |
33027926 |
gcttatagataggcttgaggtagttaaattgtaactaacttcctcatttgtacaattactcattatcatcaatacaagagttctgtagctttctctcatc |
33027827 |
T |
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| Q |
401 |
tttatctatggatactatgtttcataacacatacc |
435 |
Q |
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| T |
33027826 |
tttatctatggataccatgtttcataacacatacc |
33027792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 262 - 435
Target Start/End: Complemental strand, 33032273 - 33032104
Alignment:
| Q |
262 |
attcctctcttccttgttgtcttactattactagttagtgcttatagataggcttgagg---tagttaaattgtaactaacttcctcatttgtactatta |
358 |
Q |
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| T |
33032273 |
attcctctcttccttgttgt-------ttactagttagtgcttataaataggcttgaggaggtagtcaaattgtaactaactacctcattaatactatta |
33032181 |
T |
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| Q |
359 |
ctcattatcatcaatacaagagttccgtagctttctctcatctttatctatggatactatgtttcataacacatacc |
435 |
Q |
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| T |
33032180 |
ctcgttatcattaatacaagagtttcatagctttctgtcatctttatctgtggataccatgtttcataacacatacc |
33032104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 31692907 - 31692823
Alignment:
| Q |
293 |
tagttagtgcttatagataggcttgaggtagttaaattgtaactaacttcctcatttgtactattactcattatcatcaatacaa |
377 |
Q |
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|||||||||| |||| ||||| ||||||||||||||||||||| ||||| |||||||| | || ||||||||| |||||||||| |
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| T |
31692907 |
tagttagtgcctataaataggtttgaggtagttaaattgtaaccaactttctcatttgcaatactactcattactatcaatacaa |
31692823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 37201447 - 37201378
Alignment:
| Q |
343 |
ctcatttgtactattactcattatcatcaatacaagagttccgtagctttctctcatctttatctatgga |
412 |
Q |
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| T |
37201447 |
ctcatttgcaatattactcattaccatcaatacaaaagttttctaactttctctcaacttcatctatgga |
37201378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 4883 - 4808
Alignment:
| Q |
304 |
tatagataggcttgaggtagttaaattgtaactaacttcctcatttgtactattactcattatcatcaatacaaga |
379 |
Q |
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| T |
4883 |
tataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaaga |
4808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 23552762 - 23552687
Alignment:
| Q |
304 |
tatagataggcttgaggtagttaaattgtaactaacttcctcatttgtactattactcattatcatcaatacaaga |
379 |
Q |
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|||| |||| |||||| |||||||||||||||||||||| |||||| || || ||||||| |||||||||||||| |
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| T |
23552762 |
tataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaaga |
23552687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 24101699 - 24101659
Alignment:
| Q |
293 |
tagttagtgcttatagataggcttgaggtagttaaattgta |
333 |
Q |
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|||||||||| |||| |||||||||||||||| |||||||| |
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| T |
24101699 |
tagttagtgcctataaataggcttgaggtagtcaaattgta |
24101659 |
T |
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