View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_high_8 (Length: 420)

Name: NF13783_high_8
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_high_8
NF13783_high_8
[»] chr6 (13 HSPs)
chr6 (1-209)||(9997623-9997831)
chr6 (247-403)||(9997429-9997585)
chr6 (315-403)||(10003294-10003382)
chr6 (316-403)||(10012158-10012245)
chr6 (345-403)||(9990626-9990684)
chr6 (3-41)||(34446653-34446691)
chr6 (4-42)||(34595215-34595253)
chr6 (4-41)||(17327590-17327627)
chr6 (5-42)||(31385011-31385048)
chr6 (5-42)||(31959231-31959268)
chr6 (4-40)||(4878025-4878061)
chr6 (4-40)||(10649371-10649407)
chr6 (2-42)||(34073276-34073316)
[»] chr1 (10 HSPs)
chr1 (1-43)||(47989588-47989630)
chr1 (4-41)||(36878548-36878585)
chr1 (2-41)||(35702540-35702579)
chr1 (2-39)||(22515825-22515862)
chr1 (4-41)||(37598913-37598950)
chr1 (4-41)||(40747707-40747744)
chr1 (4-40)||(7918154-7918190)
chr1 (2-42)||(16812637-16812677)
chr1 (4-40)||(22947813-22947849)
chr1 (6-42)||(42359391-42359427)
[»] chr5 (11 HSPs)
chr5 (1-42)||(17123128-17123169)
chr5 (3-43)||(35017123-35017163)
chr5 (4-42)||(14873603-14873641)
chr5 (4-41)||(21576685-21576722)
chr5 (137-174)||(28514328-28514365)
chr5 (78-138)||(35034116-35034177)
chr5 (78-138)||(35056364-35056425)
chr5 (4-40)||(10298633-10298669)
chr5 (6-42)||(21190998-21191034)
chr5 (4-40)||(22423764-22423800)
chr5 (3-39)||(39698636-39698672)
[»] chr8 (4 HSPs)
chr8 (6-42)||(16987994-16988030)
chr8 (4-42)||(29510233-29510271)
chr8 (1-42)||(16641906-16641947)
chr8 (4-40)||(34127172-34127208)
[»] chr3 (4 HSPs)
chr3 (2-42)||(34185050-34185090)
chr3 (4-42)||(20503546-20503584)
chr3 (4-40)||(4990912-4990948)
chr3 (4-40)||(21861658-21861694)
[»] chr2 (5 HSPs)
chr2 (2-42)||(18840951-18840991)
chr2 (79-163)||(38265551-38265635)
chr2 (4-42)||(37419835-37419873)
chr2 (4-41)||(26769604-26769641)
chr2 (6-42)||(2438661-2438697)
[»] chr4 (6 HSPs)
chr4 (3-42)||(23292925-23292964)
chr4 (4-42)||(5775304-5775342)
chr4 (4-42)||(40784034-40784072)
chr4 (4-42)||(53381530-53381568)
chr4 (4-41)||(715545-715582)
chr4 (4-41)||(752871-752908)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-39)||(46741-46779)
[»] chr7 (7 HSPs)
chr7 (4-42)||(5409771-5409809)
chr7 (4-42)||(9778586-9778624)
chr7 (1-42)||(6490797-6490838)
chr7 (5-42)||(32287404-32287441)
chr7 (4-44)||(28973881-28973921)
chr7 (4-40)||(29763129-29763165)
chr7 (4-40)||(35862034-35862070)
[»] scaffold0793 (1 HSPs)
scaffold0793 (4-41)||(4821-4858)
[»] scaffold0652 (1 HSPs)
scaffold0652 (5-42)||(403-440)
[»] scaffold0475 (1 HSPs)
scaffold0475 (4-41)||(3390-3427)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9997831 - 9997623
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtcccgaatcgatttggtaaaaaggtttgggccacctacaacgtggtttcaaactgaaccagaa 100  Q
    |||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9997831 aaactacgaagcacggacactcctcagattaggggtgtcctgaatcgatttggtaaaaaggtttgggccacctacaacgtggtttcaaaccgaaccagaa 9997732  T
Q  101 ctacctttacaacaaatcaaactatactttttcgaaccaaactgtatcaaattgttattattaactgataattaataatgttgattaaataccaattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  9997731 ctacctttacaacaaatcaaactatactttttcgaaccaaactgtatcaaattgttattattaacggataattaatactgttgattaaataccaattatt 9997632  T
Q  201 atgactgtt 209  Q
    |||||||||    
T  9997631 atgactgtt 9997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 247 - 403
Target Start/End: Complemental strand, 9997585 - 9997429
Alignment:
Q  247 gaactaaattggttcaattcaattttccggtcacagtcgattctcatatgtaattaaacagaagacatgcatatataaaactgcaacagcatcatgaatt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  9997585 gaactaaattggttcaattcaattttccggtcacagtcgattctcatatgtaattagacagaagacatgcatatataaaactgcaacagcatcgtgaatt 9997486  T
Q  347 cttactttccagcaacatatggaacactatttgaccaatttgcagggaggtcacctt 403  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9997485 cttactttccagcaacatatggaacaccatttgaccaatttgcagggaggtcacctt 9997429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 10003382 - 10003294
Alignment:
Q  315 gcatatataaaactgcaacagcatcatgaattcttactttccagcaacatatggaacactatttgaccaatttgcagggaggtcacctt 403  Q
    |||||||||||  |||| |||||||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  10003382 gcatatataaagatgcagcagcatcatgatctcttactttccaacaacatatggaacaccatttgaccaatttgcagggaggtcacctt 10003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 10012245 - 10012158
Alignment:
Q  316 catatataaaactgcaacagcatcatgaattcttactttccagcaacatatggaacactatttgaccaatttgcagggaggtcacctt 403  Q
    ||||||| ||||||||||| ||||| |||||||||| ||||| | |||||||||||||  ||||||||||||||||| ||||| ||||    
T  10012245 catatatgaaactgcaacaacatcaagaattcttaccttccaccgacatatggaacaccctttgaccaatttgcaggtaggtcgcctt 10012158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 9990684 - 9990626
Alignment:
Q  345 ttcttactttccagcaacatatggaacactatttgaccaatttgcagggaggtcacctt 403  Q
    ||||||| ||||| |||||||||||||||  ||||||||||||||||| ||||||||||    
T  9990684 ttcttaccttccaccaacatatggaacaccctttgaccaatttgcaggtaggtcacctt 9990626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 34446691 - 34446653
Alignment:
Q  3 actatgaagcacggacactcctgggattaggggtgtccc 41  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  34446691 actatgaagcacggacactccttggattaggtgtgtccc 34446653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 34595253 - 34595215
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 17327590 - 17327627
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccc 17327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31385048 - 31385011
Alignment:
Q  5 tatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccg 31385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31959268 - 31959231
Alignment:
Q  5 tatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 4878061 - 4878025
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcc 4878025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 10649407 - 10649371
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  10649407 ctatgaagcacggacactccttggattaggcgtgtcc 10649371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 34073276 - 34073316
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  34073276 aactatgaagcacggacactcctcgaattagaggtgtcccg 34073316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47989630 - 47989588
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtcccga 43  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  47989630 aaactatgaagcacggacactcctcggattaggcgtgtcccga 47989588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 36878585 - 36878548
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36878585 ctatgaagcacggacactcctgggattaggcgtgtccc 36878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 35702540 - 35702579
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  35702540 aactatgaagcacggacactcctcggattaggcgtgtccc 35702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 22515825 - 22515862
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtc 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtc 22515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 37598950 - 37598913
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtccc 37598913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 40747707 - 40747744
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccc 40747744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 16812677 - 16812637
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  16812677 aactatgaagcacggacactcctcagattaggcgtgtcccg 16812637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 22947849 - 22947813
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22947849 ctatgaagcacggacactcctcggattaggcgtgtcc 22947813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 42359391 - 42359427
Alignment:
Q  6 atgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccg 42359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17123169 - 17123128
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  17123169 aaactatgaagcacggacactcctcggattaggcgtgtcccg 17123128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 35017163 - 35017123
Alignment:
Q  3 actatgaagcacggacactcctgggattaggggtgtcccga 43  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  35017163 actatgaagcacggacactcctcggattaggcgtgtcccga 35017123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 14873641 - 14873603
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccg 14873603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 21576685 - 21576722
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtccc 21576722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 28514365 - 28514328
Alignment:
Q  137 ccaaactgtatcaaattgttattattaactgataatta 174  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  28514365 ccaaactgtaccaaattattattattaactgataatta 28514328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 35034177 - 35034116
Alignment:
Q  78 cgtggtttcaaactgaaccagaactacctttacaaca-aatcaaactatactttttcgaacc 138  Q
    ||||||||| || |||||||||||||||||||||| | || |||||| |||||||| |||||    
T  35034177 cgtggtttcgaattgaaccagaactacctttacaaaagaaccaaactgtacttttttgaacc 35034116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 35056425 - 35056364
Alignment:
Q  78 cgtggtttcaaactgaaccagaactacctttacaaca-aatcaaactatactttttcgaacc 138  Q
    ||||||||| || |||||||||||||||||||||| | || |||||| |||||||| |||||    
T  35056425 cgtggtttcgaattgaaccagaactacctttacaaaagaaccaaactgtacttttttgaacc 35056364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 10298669 - 10298633
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  10298669 ctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 21190998 - 21191034
Alignment:
Q  6 atgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccg 21191034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 22423764 - 22423800
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 39698672 - 39698636
Alignment:
Q  3 actatgaagcacggacactcctgggattaggggtgtc 39  Q
    |||||||||||||||||||||| |||||||| |||||    
T  39698672 actatgaagcacggacactcctcggattaggcgtgtc 39698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 16988030 - 16987994
Alignment:
Q  6 atgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16988030 atgaagcacggacactcctcggattaggggtgtcccg 16987994  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 29510233 - 29510271
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccg 29510271  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16641906 - 16641947
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||| ||||||||| |||||||| ||||||||    
T  16641906 aaactatgaagcacagacactcctcggattaggtgtgtcccg 16641947  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 34127172 - 34127208
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  34127172 ctatgaagcacggacactccttggattaggtgtgtcc 34127208  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 34185050 - 34185090
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  34185050 aactatgaagcacggacactcctcggattaggcgtgtcccg 34185090  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 20503584 - 20503546
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccg 20503546  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 4990912 - 4990948
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtcc 4990948  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18840951 - 18840991
Alignment:
Q  2 aactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccg 18840991  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 38265635 - 38265551
Alignment:
Q  79 gtggtttcaaactgaaccagaactacctttacaacaaatcaaactatactttttcgaaccaaactgtatcaaattgttattatta 163  Q
    |||||||||||| ||||| |||||| |||||||| ||  | |||| ||||||||||| || |||  || ||||||||||||||||    
T  38265635 gtggtttcaaaccgaacctgaactagctttacaagaagccgaactgtactttttcgagccgaaccctaccaaattgttattatta 38265551  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 37419873 - 37419835
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccg 37419835  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 26769641 - 26769604
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtccc 26769604  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 2438661 - 2438697
Alignment:
Q  6 atgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccg 2438697  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 23292925 - 23292964
Alignment:
Q  3 actatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccg 23292964  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 5775304 - 5775342
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  5775304 ctatgaagcacggacactcctcggattaggcgtgtcccg 5775342  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 40784072 - 40784034
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 53381530 - 53381568
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccg 53381568  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 715545 - 715582
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccc 715582  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 752871 - 752908
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccc 752908  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46779 - 46741
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtc 39  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  46779 aaactatgaagcacggacactcctcggattaggcgtgtc 46741  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 5409771 - 5409809
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccg 5409809  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 9778624 - 9778586
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccg 9778586  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6490838 - 6490797
Alignment:
Q  1 aaactatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||||||| |||||| | ||||||||    
T  6490838 aaactatgaagcacggacactcctcggattaagcgtgtcccg 6490797  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32287404 - 32287441
Alignment:
Q  5 tatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccg 32287441  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 28973881 - 28973921
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcccgaa 44  Q
    ||||||||||||||||| ||| |||||||| ||||||||||    
T  28973881 ctatgaagcacggacacacctcggattaggcgtgtcccgaa 28973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 29763129 - 29763165
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcc 29763165  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 35862070 - 35862034
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtcc 40  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  35862070 ctatgaagcacggacactcctcggattaggcgtgtcc 35862034  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 4821 - 4858
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccc 4858  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 403 - 440
Alignment:
Q  5 tatgaagcacggacactcctgggattaggggtgtcccg 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccg 440  T

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Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 3427 - 3390
Alignment:
Q  4 ctatgaagcacggacactcctgggattaggggtgtccc 41  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  3427 ctatgaagcacggacactcctcggattaggcgtgtccc 3390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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