View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_high_9 (Length: 409)
Name: NF13783_high_9
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 39979446 - 39979061
Alignment:
| Q |
6 |
agcagcacagaacattctagtaaattgtaatctctgccattaaaccaataaagttgtgaatttgccattttctaatgccattgtgatttgtgaagccatg |
105 |
Q |
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| T |
39979446 |
agcagaacagaacattctagtaaattgtaatctctgccattaaaccaataaagttgtgaatttgccattttctaatgccattgtgatttgtgaagccatg |
39979347 |
T |
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| Q |
106 |
ctagtccatcatcgactaaattgtgaaaattctgatgagctagctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979346 |
ctagtccatcatcgactaaattgtgaaaattctgatgagct--ctacaaaacatagtagtgtatgattgcaacatgttcttcctgaagagaggataagag |
39979249 |
T |
|
| Q |
206 |
gagatagccacactttagacaaaatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979248 |
gagatagccacactttagacaaaatgattcctgcgaaacctatgctttctcacagattgaacatacttgtacctatggttcctgtgcattttttcccaat |
39979149 |
T |
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| Q |
306 |
gcaaagaatagtcaatggtgttctagattcttaccattcagaaaagttttcaatccataaaactttttggaaaatgctaaggaataat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979148 |
gcaaagaatagtcaatggtgttctagattcttaccattcagaaaagttttcaatccataaaactttttggaaaatgctaaggaataat |
39979061 |
T |
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