View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_1 (Length: 724)

Name: NF13783_low_1
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_1
NF13783_low_1
[»] chr5 (25 HSPs)
chr5 (219-702)||(52603-53097)
chr5 (14-105)||(52388-52479)
chr5 (604-707)||(37046200-37046303)
chr5 (626-707)||(31906075-31906156)
chr5 (608-707)||(41039514-41039613)
chr5 (613-707)||(42664017-42664111)
chr5 (626-707)||(41741602-41741683)
chr5 (628-707)||(33115277-33115356)
chr5 (639-706)||(33233083-33233150)
chr5 (613-691)||(3260299-3260377)
chr5 (613-707)||(29541783-29541877)
chr5 (608-693)||(4295582-4295667)
chr5 (628-707)||(25256221-25256300)
chr5 (628-707)||(25320010-25320089)
chr5 (604-707)||(33386836-33386939)
chr5 (639-707)||(33082340-33082408)
chr5 (640-707)||(14083134-14083201)
chr5 (642-707)||(11017831-11017896)
chr5 (604-680)||(2526938-2527014)
chr5 (639-707)||(27737952-27738020)
chr5 (656-707)||(10900770-10900821)
chr5 (613-666)||(33115303-33115356)
chr5 (628-707)||(20069068-20069147)
chr5 (643-693)||(29367038-29367087)
chr5 (386-420)||(40665034-40665068)
[»] chr4 (27 HSPs)
chr4 (604-707)||(26459620-26459723)
chr4 (604-703)||(22605721-22605820)
chr4 (604-707)||(28963220-28963323)
chr4 (604-707)||(39733453-39733556)
chr4 (608-707)||(56561123-56561222)
chr4 (628-707)||(29385432-29385511)
chr4 (604-707)||(49724399-49724502)
chr4 (628-707)||(53663021-53663100)
chr4 (625-707)||(5937299-5937381)
chr4 (613-707)||(24035563-24035657)
chr4 (613-707)||(39382381-39382475)
chr4 (613-707)||(49128298-49128392)
chr4 (604-707)||(16202495-16202598)
chr4 (604-707)||(38768432-38768534)
chr4 (620-707)||(45106414-45106501)
chr4 (604-683)||(51677627-51677706)
chr4 (613-707)||(24247187-24247281)
chr4 (639-707)||(53403523-53403591)
chr4 (628-707)||(48407546-48407625)
chr4 (652-707)||(50523279-50523334)
chr4 (604-696)||(51833421-51833513)
chr4 (608-666)||(48407572-48407630)
chr4 (629-681)||(29385418-29385470)
chr4 (613-665)||(31430887-31430939)
chr4 (641-681)||(48550281-48550321)
chr4 (628-693)||(28912259-28912324)
chr4 (639-680)||(48407588-48407629)
[»] scaffold0068 (1 HSPs)
scaffold0068 (626-707)||(38346-38427)
[»] chr3 (27 HSPs)
chr3 (604-707)||(11264334-11264437)
chr3 (604-707)||(45488461-45488564)
chr3 (604-707)||(48253855-48253958)
chr3 (629-707)||(33025167-33025245)
chr3 (613-707)||(1528148-1528242)
chr3 (613-707)||(38469823-38469917)
chr3 (613-707)||(47140712-47140806)
chr3 (613-707)||(51124732-51124826)
chr3 (628-707)||(30811345-30811424)
chr3 (628-707)||(42275173-42275252)
chr3 (639-693)||(42074985-42075039)
chr3 (613-707)||(47697332-47697426)
chr3 (613-691)||(52693198-52693276)
chr3 (626-707)||(39252118-39252199)
chr3 (608-696)||(44329283-44329371)
chr3 (628-693)||(28884329-28884394)
chr3 (604-693)||(39267019-39267108)
chr3 (626-707)||(48181702-48181783)
chr3 (639-707)||(45151249-45151317)
chr3 (643-707)||(50392218-50392282)
chr3 (628-707)||(41536412-41536491)
chr3 (613-692)||(5104671-5104750)
chr3 (611-650)||(45423751-45423790)
chr3 (628-707)||(51230341-51230420)
chr3 (604-666)||(30811371-30811433)
chr3 (604-666)||(33025157-33025219)
chr3 (604-666)||(48181728-48181790)
[»] chr1 (31 HSPs)
chr1 (604-693)||(11829666-11829755)
chr1 (604-693)||(31099816-31099905)
chr1 (628-707)||(6706761-6706840)
chr1 (626-707)||(47655080-47655161)
chr1 (628-707)||(41512786-41512864)
chr1 (604-707)||(42137051-42137154)
chr1 (604-707)||(50031472-50031575)
chr1 (613-707)||(5270968-5271062)
chr1 (613-707)||(26821977-26822071)
chr1 (613-707)||(26999753-26999847)
chr1 (613-707)||(36495842-36495936)
chr1 (613-707)||(38627859-38627953)
chr1 (613-707)||(50978288-50978382)
chr1 (613-707)||(51487837-51487931)
chr1 (639-707)||(24076106-24076174)
chr1 (628-707)||(7385861-7385940)
chr1 (613-707)||(15353800-15353894)
chr1 (626-707)||(16342843-16342924)
chr1 (628-707)||(1763340-1763419)
chr1 (604-696)||(27576786-27576879)
chr1 (628-688)||(7592683-7592743)
chr1 (656-707)||(46408113-46408164)
chr1 (604-666)||(46033107-46033169)
chr1 (641-681)||(26058344-26058384)
chr1 (643-711)||(27068449-27068516)
chr1 (641-681)||(27801635-27801675)
chr1 (643-707)||(44740738-44740802)
chr1 (657-707)||(11050534-11050584)
chr1 (643-693)||(46033131-46033181)
chr1 (613-666)||(7592683-7592736)
chr1 (643-692)||(45179982-45180031)
[»] scaffold0006 (1 HSPs)
scaffold0006 (604-707)||(92182-92283)
[»] chr2 (20 HSPs)
chr2 (604-707)||(32496559-32496665)
chr2 (604-707)||(44003283-44003386)
chr2 (608-707)||(35457542-35457641)
chr2 (604-693)||(33597562-33597651)
chr2 (639-707)||(7474170-7474238)
chr2 (608-707)||(13896621-13896720)
chr2 (608-707)||(14037238-14037337)
chr2 (613-707)||(31686282-31686376)
chr2 (613-707)||(40255150-40255244)
chr2 (613-707)||(44282815-44282909)
chr2 (604-707)||(19860901-19861004)
chr2 (628-707)||(43341652-43341731)
chr2 (613-707)||(14380747-14380841)
chr2 (613-707)||(31787290-31787384)
chr2 (643-707)||(17481431-17481495)
chr2 (626-707)||(37640137-37640218)
chr2 (628-692)||(43695686-43695750)
chr2 (655-696)||(2442635-2442676)
chr2 (626-707)||(16765668-16765749)
chr2 (604-666)||(37640130-37640192)
[»] chr7 (27 HSPs)
chr7 (604-707)||(26827119-26827222)
chr7 (609-707)||(25472133-25472231)
chr7 (608-707)||(30825792-30825891)
chr7 (607-707)||(37371301-37371401)
chr7 (628-707)||(47085221-47085300)
chr7 (613-707)||(31011958-31012052)
chr7 (629-693)||(30139210-30139274)
chr7 (628-707)||(12910551-12910630)
chr7 (613-707)||(25340939-25341033)
chr7 (628-693)||(298049-298113)
chr7 (638-707)||(26827009-26827078)
chr7 (643-702)||(20388767-20388826)
chr7 (639-707)||(15000510-15000578)
chr7 (628-693)||(32451406-32451472)
chr7 (645-707)||(45203145-45203207)
chr7 (639-707)||(4035976-4036044)
chr7 (628-707)||(25191241-25191320)
chr7 (626-681)||(25472120-25472175)
chr7 (655-696)||(41065408-41065449)
chr7 (641-681)||(41715757-41715797)
chr7 (626-681)||(30139192-30139247)
chr7 (604-650)||(1999611-1999657)
chr7 (608-666)||(12910577-12910635)
chr7 (604-666)||(43664218-43664280)
chr7 (628-681)||(298034-298087)
chr7 (641-686)||(37562665-37562710)
chr7 (626-707)||(43664225-43664306)
[»] scaffold0808 (1 HSPs)
scaffold0808 (626-707)||(4731-4812)
[»] scaffold0097 (1 HSPs)
scaffold0097 (604-707)||(32422-32525)
[»] chr8 (23 HSPs)
chr8 (604-693)||(26575878-26575967)
chr8 (628-693)||(45275779-45275844)
chr8 (604-707)||(8417296-8417399)
chr8 (613-707)||(194026-194120)
chr8 (613-707)||(629354-629448)
chr8 (613-707)||(30211224-30211318)
chr8 (613-707)||(30982572-30982666)
chr8 (613-707)||(34773791-34773885)
chr8 (628-707)||(44240747-44240826)
chr8 (604-666)||(11071139-11071201)
chr8 (608-669)||(36820920-36820981)
chr8 (643-707)||(2026150-2026214)
chr8 (628-693)||(23018245-23018310)
chr8 (643-707)||(35801708-35801772)
chr8 (628-707)||(11071113-11071192)
chr8 (644-707)||(17073628-17073691)
chr8 (644-707)||(17574579-17574642)
chr8 (604-650)||(23018236-23018282)
chr8 (608-666)||(44240773-44240831)
chr8 (613-665)||(308905-308957)
chr8 (639-691)||(924683-924735)
chr8 (604-666)||(45275770-45275832)
chr8 (641-686)||(26243206-26243251)
[»] chr6 (8 HSPs)
chr6 (613-707)||(30019860-30019954)
chr6 (604-696)||(27825646-27825736)
chr6 (626-707)||(10683805-10683886)
chr6 (604-680)||(4147464-4147540)
chr6 (627-707)||(20837890-20837970)
chr6 (656-707)||(21515110-21515161)
chr6 (387-420)||(2166375-2166408)
chr6 (387-420)||(2178008-2178041)
[»] scaffold0003 (1 HSPs)
scaffold0003 (643-692)||(301665-301714)
[»] scaffold0184 (1 HSPs)
scaffold0184 (639-707)||(9170-9238)
[»] scaffold0069 (1 HSPs)
scaffold0069 (641-680)||(17525-17564)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 219 - 702
Target Start/End: Original strand, 52603 - 53097
Alignment:
Q  219 aataacaacaatatatatgatcaagtgaacaagtgaagttgggaaagcttcaatttcttccttcaccacgtcaccccttcctaaactcctcttctctttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52603 aataacaacaatatatatgatcaagtgaacaagtgaagttgggaaagcttcaatttcttccttcaccacgtcaccccttcctaaactcctcttctctttt 52702  T
Q  319 ctccctctttcattgggctcttccattgggttgggcccatcaacacaaggttaaccaaaatttgatggttactcttctcactttcaaaatttctcatttt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52703 ctccctctttcattgggctcttccattgggttgggcccatcaacacaaggttaaccaaaatttgaaggttactcttctcactttcaaaatttctcatttt 52802  T
Q  419 cgtagctattgttcgcatctccag-----------tatcattcggtagtttttagattggataaatcactttttaaatcaactttaaaaattccgttaaa 507  Q
    ||||||||||||||||||||||||           ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52803 cgtagctattgttcgcatctccagcgatagttaagtatcattcgataatttttagattggatgaatcactttttaaatcaactttaaaaattccgttaaa 52902  T
Q  508 acggaaagtattgtgatatgttcagggtggcttggagaaaaagtagaagtgagaagagtaattttcccaaaattttgatcaattcttcaaacataatttg 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52903 acggaaagtattgtgatatgttcagggtggcttggagaaaaagtagaagtgagaagagtaattttcccaaaattttgatcaatttttcaaacataatttg 53002  T
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgca 702  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  53003 gataaaattgattatggcataattgattctaatagaattgattctgacataattgattttaagataattgatttatgtttggatacgatgatgca 53097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 52388 - 52479
Alignment:
Q  14 cacagacagaacaatgaaaaacaaaacaattaacatagaaaatctcggtcggtcggttacctgaaaggaaagagacctagatccttgcagct 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52388 cacagacagaacaatgaaaaacaaaacagttaacatagaaaatctcggtcggtcggttacctgaaaggaaagagacctagatccttgcagct 52479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 37046303 - 37046200
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||| ||| ||||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  37046303 tttgaatagaattgattctgacataattgattctgttagaattgattctgacagaattgattttaagagaattgatttatgtttgaatacaataatgcag 37046204  T
Q  704 aatt 707  Q
    ||||    
T  37046203 aatt 37046200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 31906156 - 31906075
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  31906156 ataattgattctgatagaattgattatgacataattgattttgagagaattgatttatgtttggatacaataatgcagaatt 31906075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 707
Target Start/End: Original strand, 41039514 - 41039613
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||| || |||||||| |  || |||||||| |||||||||||||||| |||||| |||||||||||||||||| || ||||||||||    
T  41039514 gatagaattgattctgacagaattgattttgttaaaattgattgtgacagaattgattttgagagaactgatttatgtttggatacaataatgcagaatt 41039613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 42664111 - 42664017
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  42664111 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 42664017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 41741602 - 41741683
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||| ||| |||||||||||| | |||||| |||||||||||||||| || ||||||||||    
T  41741602 ataattgattctgatagaattgattttgatagaattgattttgaaagaattaatttatgtttggatacaataatgcagaatt 41741683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 33115356 - 33115277
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | |||||||||| ||| |||||||||||| | ||||||||||||||||||||||| || ||||||||||    
T  33115356 aattgattctgacagaattgattctgaaagaattgattttgacagaattgatttatgtttggatacaataatgcagaatt 33115277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 639 - 706
Target Start/End: Complemental strand, 33233150 - 33233083
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaat 706  Q
    |||||||||||| |||||||||||||| | ||||||||||||||||||||||||| || |||||||||    
T  33233150 atagaattgattctgacagaattgattatgagagaattgatttatgtttggatacaataatgcagaat 33233083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 691
Target Start/End: Original strand, 3260299 - 3260377
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggat 691  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | |||||||||||||||||||||    
T  3260299 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggat 3260377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 29541783 - 29541877
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| |||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  29541783 aattaattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 29541877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 608 - 693
Target Start/End: Complemental strand, 4295667 - 4295582
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||| |||||||| || || |||||||| | |||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||    
T  4295667 gatagaattgattttgacagaattgattttgatagaattgattctgacataattgattttgagagaattgatttatgtttgaatac 4295582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 25256221 - 25256300
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| ||| |||||||||| ||||| || ||||||| ||||||||||||||||||||||||| || ||| ||||||    
T  25256221 aattgattttaaaagaattgattctgacataaatgattttgagagaattgatttatgtttggatacaataatgtagaatt 25256300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 25320010 - 25320089
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| ||| |||||||||| ||||| || ||||||| ||||||||||||||||||||||||| || ||| ||||||    
T  25320010 aattgattttaaaagaattgattctgacataaatgattttgagagaattgatttatgtttggatacaataatgtagaatt 25320089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 33386836 - 33386939
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||||||    |||||||| | |||||||||||| ||| | |||||||||| ||||||||| ||||||||||||||| || ||| ||    
T  33386836 tttggatagaattgattctgattgaattgattttgatagaattgattctgatataattgattttgagagaattggtttatgtttggatacaataatgtag 33386935  T
Q  704 aatt 707  Q
    ||||    
T  33386936 aatt 33386939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 707
Target Start/End: Original strand, 33082340 - 33082408
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| || ||| ||||||    
T  33082340 atagaattgattctgatagaattgattttgagagaattgatttatgtttgaatacaataatgtagaatt 33082408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 707
Target Start/End: Complemental strand, 14083201 - 14083134
Alignment:
Q  640 tagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| ||| |||||||||||| | ||||||||||||||||||||| | || ||||||||||    
T  14083201 tagaattgattctgaaagaattgattttgacagaattgatttatgtttggatgcaataatgcagaatt 14083134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 642 - 707
Target Start/End: Original strand, 11017831 - 11017896
Alignment:
Q  642 gaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||| ||||| |||||||||| | ||||||||||||||||||||||  || ||||||||||    
T  11017831 gaattgattctgacataattgattttgatagaattgatttatgtttggatataataatgcagaatt 11017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 680
Target Start/End: Complemental strand, 2527014 - 2526938
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatt 680  Q
    |||||||| ||||||||||| || |||||||||| ||||||||||||    || |||||||||| ||||||||||||    
T  2527014 tttggatagaattgattctgacagaattgattctgatagaattgattccatcataattgattttgagagaattgatt 2526938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 707
Target Start/End: Original strand, 27737952 - 27738020
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| ||| |||||| ||| | | ||||||||||||||||||||||| || ||||||||||    
T  27737952 atagaattgattctgatagaattaattctgacagaattgatttatgtttggatacaataatgcagaatt 27738020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 656 - 707
Target Start/End: Complemental strand, 10900821 - 10900770
Alignment:
Q  656 agaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  10900821 agaattgattttgagagaattgatttatgtttggatacaataatgcataatt 10900770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 666
Target Start/End: Complemental strand, 33115356 - 33115303
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||||    
T  33115356 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattt 33115303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 20069068 - 20069147
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| | | |||||||||| | ||| |||||||||||||| ||||||||||  ||||||||| || ||||| ||||    
T  20069068 aattgattatgacagaattgattctaacataattgattttaagataattgatttacatttggatacaataatgcaaaatt 20069147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 693
Target Start/End: Original strand, 29367038 - 29367087
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  29367038 aattgattataacataattgatttga-gagaattgatttatgtttggatac 29367087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 40665068 - 40665034
Alignment:
Q  386 gttactcttctcactttcaaaatttctcattttcg 420  Q
    ||||||||| |||||||||||||||||||||||||    
T  40665068 gttactcttgtcactttcaaaatttctcattttcg 40665034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 9e-35; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 26459723 - 26459620
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||     
T  26459723 tttggataaaattgattctagcagaattgattctaatagaattgattctgacataattgattttaagagaattgatttatgtttggatacaataatgcaa 26459624  T
Q  704 aatt 707  Q
    ||||    
T  26459623 aatt 26459620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 604 - 703
Target Start/End: Original strand, 22605721 - 22605820
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| ||||||||||| || |||||||| | ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  22605721 tttggatagaattgattctgacagaattgattttgatagaattgattgggacagaattgattttgagagaattgatttatgtttggatacaataatgcag 22605820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 28963220 - 28963323
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||||||||||||||   | |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| || |||||     
T  28963220 tttggataaaattgattctaatagaattgattctgatagaattgattctgacagaattgattttgagagaattgatttatgtttagatacaataatgcaa 28963319  T
Q  704 aatt 707  Q
    ||||    
T  28963320 aatt 28963323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 39733556 - 39733453
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||| || || |||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||    
T  39733556 tttggatataattgattatgacagaattgattctgataaacttgattatgacagaattgattttgagagaattgatttatgtttggatacaataatgtag 39733457  T
Q  704 aatt 707  Q
    ||||    
T  39733456 aatt 39733453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 608 - 707
Target Start/End: Complemental strand, 56561222 - 56561123
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||| ||||||||||||| |||||||||||| | |||||||||||| | ||||||||||||||||||||||||| || | ||||||||    
T  56561222 gatagaattgattctgacataattgattctgatagaattgattctcacagaattgattatgagagaattgatttatgtttggatacaataacgcagaatt 56561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 29385432 - 29385511
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| || ||||| ||||    
T  29385432 aattgattctaatagaattgattttgacagaattgattttgaaagaattgatttatgtttggatacaataatgcataatt 29385511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 49724502 - 49724399
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||| ||| |||||||| || ||||||||||| | |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| || |||||     
T  49724502 tttgaatataattgattatgacataattgattatgatagaattgattatgacataattgattttgagagaattggtttatgtttggatacaataatgcat 49724403  T
Q  704 aatt 707  Q
    ||||    
T  49724402 aatt 49724399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 53663021 - 53663100
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||| ||||    
T  53663021 aattgattctgatagaattgattatgacataattgattttaaaagaattgatttatgtttggatacaataatgcaaaatt 53663100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 625 - 707
Target Start/End: Original strand, 5937299 - 5937381
Alignment:
Q  625 cataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||| |||| |||| || ||||||||||    
T  5937299 cataattgattttgatagaattgattatgacagcattgatttttagagaattgatttatatttgaatacaataatgcagaatt 5937381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 24035563 - 24035657
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  24035563 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 24035657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 39382381 - 39382475
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  39382381 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 39382475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 49128392 - 49128298
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  49128392 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 49128298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 16202495 - 16202598
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||||||    |||||||| | |||||||||||| ||| | |||||||||| ||||||||||||||||||||||||| || ||| ||    
T  16202495 tttggatagaattgattctgattgaattgattttgatagaattgattttgataaaattgattttgagagaattgatttatgtttggatacaataatgtag 16202594  T
Q  704 aatt 707  Q
    ||||    
T  16202595 aatt 16202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 38768534 - 38768432
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| ||||||||||| || |||||||| | |||||||||||| |||||| ||||||||| ||| ||||||||||||| ||||||| ||  |||||    
T  38768534 tttggatagaattgattctgacagaattgattttgatagaattgattgtgacag-attgattttgagataattgatttatgtctggatacaatactgcag 38768436  T
Q  704 aatt 707  Q
    ||||    
T  38768435 aatt 38768432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 620 - 707
Target Start/End: Complemental strand, 45106501 - 45106414
Alignment:
Q  620 tctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||| | | |||||||||| ||||| |||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  45106501 tctgacataattgattttgagagaattgattctgacataattgattttgagagaattgatttatgtttggatacaataatgcaaaatt 45106414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 683
Target Start/End: Complemental strand, 51677706 - 51677627
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttat 683  Q
    |||||||| ||||||||||   | |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  51677706 tttggatataattgattctaaaagaattgattctgatagaattgattctgacagaattgattttgagagaattgatttat 51677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 24247281 - 24247187
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  24247281 aattgattctgacagaattgattctgaaagaattgattttgtcagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 24247187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 707
Target Start/End: Original strand, 53403523 - 53403591
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| || ||||| ||||    
T  53403523 atagaattgattatgacataattgattttgagagaattggtttatgtttggatacaataatgcataatt 53403591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 48407625 - 48407546
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | |||||||||| ||| |||||||||| | | ||||||||||||||||||||||| || ||||||||||    
T  48407625 aattgattctgacagaattgattttgatagaattgattgtgacagaattgatttatgtttggatacaataatgcagaatt 48407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 707
Target Start/End: Original strand, 50523279 - 50523334
Alignment:
Q  652 tgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  50523279 tgacagaattgattttgagagaattgatttatgtttggatacaataatgcagaatt 50523334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 696
Target Start/End: Original strand, 51833421 - 51833513
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgat 696  Q
    |||||||||||||||||| | || |||||||||| ||| ||||||||    ||||||| |||   |||||||||||||||||||| |||||||    
T  51833421 tttggataaaattgattccgacaaaattgattctgataaaattgattccatcagaattaattcggagagaattgatttatgtttgaatacgat 51833513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 48407630 - 48407572
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||| ||||||||||| || |||||||| | |||||||||||| |||||||||||||||    
T  48407630 gatagaattgattctgacagaattgattttgatagaattgattgtgacagaattgattt 48407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 681
Target Start/End: Original strand, 29385418 - 29385470
Alignment:
Q  629 attgattctaatagaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||||||||||||||| | | |||||||||||| | |||||||||||    
T  29385418 attgattctaatagaattgattctaatagaattgattttgacagaattgattt 29385470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 665
Target Start/End: Original strand, 31430887 - 31430939
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgatt 665  Q
    ||||||||||| || |||||||||| | |||||||||| ||||||||||||||    
T  31430887 aattgattctgacagaattgattctgaaagaattgattttgacagaattgatt 31430939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 681
Target Start/End: Complemental strand, 48550321 - 48550281
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  48550321 agaattgattttgatagaattgattttaagagaattgattt 48550281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 693
Target Start/End: Complemental strand, 28912324 - 28912259
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    ||||| |||| ||| ||||||||||  || ||||| |||| |||||||| ||||||||||||||||    
T  28912324 aattgtttcttataaaattgattatatcataattggttttcagagaatttatttatgtttggatac 28912259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 680
Target Start/End: Complemental strand, 48407629 - 48407588
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatt 680  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  48407629 atagaattgattctgacagaattgattttgatagaattgatt 48407588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 38427 - 38346
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  38427 ataattgattctaatagaattgattttgacagaattgattttgagagaattgatttatgtttggatacaataatgcagaatt 38346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 11264437 - 11264334
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||||||||||||||| || | |||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |  ||||||    
T  11264437 tttggataaaattgattctgacagagttgattctgatagaattgattgtgacagaattgattttgagagaattaatttatgtttggatacaaaaatgcag 11264338  T
Q  704 aatt 707  Q
    ||||    
T  11264337 aatt 11264334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 45488461 - 45488564
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    ||||||||||||||||| || ||||||||||| | |||||||||||| ||| |||||||||||| ||| |||||||||| |||||||||| || |||||     
T  45488461 tttggataaaattgattatgacataattgattatgatagaattgattttgaaagaattgattttgagataattgatttacgtttggatacaataatgcaa 45488560  T
Q  704 aatt 707  Q
    ||||    
T  45488561 aatt 45488564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 48253855 - 48253958
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||||||||||||||   | |||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| || |||||     
T  48253855 tttggataaaattgattctaatagaattgattttgatagaattgattctgacagaattgattttgagagaattgatttatgtttagatacaataatgcaa 48253954  T
Q  704 aatt 707  Q
    ||||    
T  48253955 aatt 48253958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 707
Target Start/End: Original strand, 33025167 - 33025245
Alignment:
Q  629 attgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  33025167 attgattctgatataattgattctgacagaattgattttgagagaattgatttatgtttggatacaataatgcagaatt 33025245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 1528242 - 1528148
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  1528242 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 1528148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 38469917 - 38469823
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  38469917 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 38469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 47140712 - 47140806
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  47140712 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 47140806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 51124732 - 51124826
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  51124732 aattgattctgacagaattgattctgaaagaattgattctgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 51124826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 30811424 - 30811345
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| | ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| || || |||||||    
T  30811424 aattgattatgatataattgattctgacagaattgattttgagagaattgatttatgtttggatacaataattcagaatt 30811345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 42275252 - 42275173
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| | ||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||| || ||||||||||    
T  42275252 aattgattttgatagagttgattatgacataattgattttgagagaattggtttatgtttggatacaataatgcagaatt 42275173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 639 - 693
Target Start/End: Complemental strand, 42075039 - 42074985
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  42075039 atagaattgattctgacagaattgattttgagagaattgatttatgtttggatac 42074985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 47697426 - 47697332
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  47697426 aattgattctgacagaattgattctgaaagaattgattttggcagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 47697332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 691
Target Start/End: Complemental strand, 52693276 - 52693198
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggat 691  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | |||||||||||||||||||||    
T  52693276 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggat 52693198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 39252199 - 39252118
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||||||| |||||||| ||| |||||||||||| ||  ||||||||||| ||||||||| || ||||||||||    
T  39252199 ataattgattctaatataattgattctgatagaattgattttgagttaattgatttatatttggatacaataatgcagaatt 39252118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 608 - 696
Target Start/End: Complemental strand, 44329371 - 44329283
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgat 696  Q
    |||| ||||||||||||||||||| | ||| ||| |||||||| | ||| ||||| |||| |||||||||||||||||||| |||||||    
T  44329371 gatagaattgattctggcataattaaatctgatataattgattctcacataattgttttttagagaattgatttatgtttgtatacgat 44329283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 628 - 693
Target Start/End: Complemental strand, 28884394 - 28884329
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    ||||||||||  ||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  28884394 aattgattctggtagaattgattctgacataattgattttaaaagaattaatttatgtttggatac 28884329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 693
Target Start/End: Original strand, 39267019 - 39267108
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||| ||||||||||| || |||||||| |  ||||||||||| | |   |||||||||| |||||||||||||||||||||||||    
T  39267019 tttggatagaattgattctgccagaattgattatggtagaattgattctaatgtaattgattttgagagaattgatttatgtttggatac 39267108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 48181783 - 48181702
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | | | |||||||| ||| |||||||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  48181783 ataattgattttgacataattgattctgatagaattgattttgagataattgatttatgtttggatacaataatgcagaatt 48181702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 45151317 - 45151249
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||| || ||| ||||||    
T  45151317 atagaattgattgtgacaaaattgattttgggagaattgatttatgtttggatacaataatgtagaatt 45151249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 643 - 707
Target Start/End: Original strand, 50392218 - 50392282
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||| |||||||||||||||| | ||||||||||||||||||||||| || ||| ||||||    
T  50392218 aattaattctgacagaattgattttgatagaattgatttatgtttggatacaataatgtagaatt 50392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 41536491 - 41536412
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| ||  |||||||||||||||| |||||||||| ||| ||||||||| ||||| ||||| || ||| ||||||    
T  41536491 aattgattataccagaattgattatgacataattgattttgagataattgatttttgtttagatacaataatgtagaatt 41536412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 692
Target Start/End: Original strand, 5104671 - 5104750
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggata 692  Q
    |||||| || || |||||||||||| |  ||||||||| || || |||||| ||||  ||||||||||||||||||||||    
T  5104671 aattgagtcaggtataattgattctgacggaattgattttgtcacaattgagtttagtagaattgatttatgtttggata 5104750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 650
Target Start/End: Original strand, 45423751 - 45423790
Alignment:
Q  611 aaaattgattctggcataattgattctaatagaattgatt 650  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  45423751 aaaattgattttggcataattgattctgatagaattgatt 45423790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 51230420 - 51230341
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| | | ||||||||||  || |||||||||| | |||||||||||||||||||| |||| || ||||| ||||    
T  51230420 aattgattttgaaagaattgattccgagagaattgattctgagagaattgatttatgtttgaatacaataatgcaaaatt 51230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Complemental strand, 30811433 - 30811371
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||||||| |||||||| ||  |||||||||||| | |||||||||| ||| |||||||||||    
T  30811433 tttggatagaattgattatgatataattgattctgacagaattgattttgagagaattgattt 30811371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 33025157 - 33025219
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    ||||||||  ||||||||||  |||||||||||| | |||||||||| ||| |||||||||||    
T  33025157 tttggataggattgattctgatataattgattctgacagaattgattttgagagaattgattt 33025219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Complemental strand, 48181790 - 48181728
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||| ||| |||||||| || ||||||||||||| |||||||||||| ||| | |||||||||    
T  48181790 tttgaatataattgattttgacataattgattctgatagaattgattttgagataattgattt 48181728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 604 - 693
Target Start/End: Complemental strand, 11829755 - 11829666
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    ||||||||||||||||| || || ||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||    
T  11829755 tttggataaaattgattatgacagaattgattctaatagaattgattctgtcagaattgattttgaaagaattgatttatgtttggatac 11829666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 604 - 693
Target Start/End: Original strand, 31099816 - 31099905
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||| ||||| |||||||||| | |||||||||||||||||||||||    
T  31099816 tttggatagaattgattctagcataattgattctgatagaattgattctgacataattgattttgaaagaattgatttatgtttggatac 31099905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 6706840 - 6706761
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| || ||||||||||    
T  6706840 aattgattctaatagaattgattctgacagaattgattttgaaagaattgatttatgtttggatacaataatgcagaatt 6706761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 47655080 - 47655161
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  47655080 ataattgattctgatagaattgattctcacagaattgatttttagagaattgatttatgtttggatacaataatgcagaatt 47655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 41512864 - 41512786
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||    
T  41512864 aattgattctgatagaattgattctgacagaattgattttgagagaattgatttatgtttagatacaat-atgcagaatt 41512786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 42137051 - 42137154
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||| ||  | |||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||||  ||| || ||||||    
T  42137051 tttggatagaattgattatgatagaattgattcttatagaattgattttgacaaaattgattttgagagaattgatttatgtttgtgtacaataatgcag 42137150  T
Q  704 aatt 707  Q
    ||||    
T  42137151 aatt 42137154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 50031575 - 50031472
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||||||  | |||||||||| ||| |||||||| |||||||||||||||| ||||||||| ||||||||| ||||| || |||||     
T  50031575 tttggatataattgattctgatagaattgattctgatataattgattctgacagaattgattttgagagaattggtttatgttttgatacaataatgcat 50031476  T
Q  704 aatt 707  Q
    ||||    
T  50031475 aatt 50031472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 5270968 - 5271062
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  5270968 aattgattctgacagaattgattctgaaagaattgattctgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 5271062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 26822071 - 26821977
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  26822071 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 26821977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 26999753 - 26999847
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  26999753 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 26999847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 36495842 - 36495936
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  36495842 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 36495936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 38627953 - 38627859
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  38627953 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 38627859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 50978288 - 50978382
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  50978288 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 50978382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 51487837 - 51487931
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  51487837 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 51487931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 24076174 - 24076106
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||    
T  24076174 atagaattgattctgacagaattgattttgagagaattgatttatgtttggatacaataatgtagaatt 24076106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 7385940 - 7385861
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||  ||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||| || ||||||||||    
T  7385940 aattgattctgttagaattgattctgacagaattaattttgagagaattgatttatttttggatacaataatgcagaatt 7385861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 15353894 - 15353800
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  15353894 aattgattctgacagaattgattctgaaagaattgattttggcagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 15353800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 16342843 - 16342924
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||||||| ||||||| ||| | |||||||| | | ||||||||||||||||||||||| || ||||||||||    
T  16342843 ataattgattctaatagtattgattttgaaaaaattgattctgacagaattgatttatgtttggatacaataatgcagaatt 16342924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 1763419 - 1763340
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| | |||||||| ||| | |||||||||| ||||||||||||||||||||||||| || ||| ||||||    
T  1763419 aattgattctaaaaaaattgattctgataaaattgattttgagagaattgatttatgtttggatacaataatgtagaatt 1763340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 696
Target Start/End: Complemental strand, 27576879 - 27576786
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattga-tttatgtttggatacgat 696  Q
    |||||||| ||||||||||| || |||||||||| ||||||||||||    ||||||||||||| ||| ||| || |||||||||| |||||||    
T  27576879 tttggatagaattgattctgacagaattgattctgatagaattgattccatcagaattgattttgagataatcgattttatgtttgaatacgat 27576786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 688
Target Start/End: Original strand, 7592683 - 7592743
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttg 688  Q
    |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||    
T  7592683 aattgattctgacagaattgattttgacagaattgattctgacagaattgatttatgtttg 7592743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 656 - 707
Target Start/End: Complemental strand, 46408164 - 46408113
Alignment:
Q  656 agaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | ||||||||||||||||||||||||| || ||||||||||    
T  46408164 agaattgattctgagagaattgatttatgtttggatacaataatgcagaatt 46408113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 46033107 - 46033169
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||||||| ||||||| |||| | |||||||||| |||||||||||| ||| |||||||||||    
T  46033107 tttggatagaattgatcctggaaaaattgattctgatagaattgattttgaaagaattgattt 46033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 681
Target Start/End: Complemental strand, 26058384 - 26058344
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  26058384 agaattgattttgatagaattgattttaagagaattgattt 26058344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 711
Target Start/End: Complemental strand, 27068516 - 27068449
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatttgat 711  Q
    |||||||| ||||| ||||||||| | | ||||||||||||||||||||||||| ||  ||||||||||    
T  27068516 aattgattctgacataattgatttgagg-gaattgatttatgtttggatacgataatatagaatttgat 27068449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 681
Target Start/End: Original strand, 27801635 - 27801675
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  27801635 agaattgattttgatagaattgattttaagagaattgattt 27801675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 643 - 707
Target Start/End: Complemental strand, 44740802 - 44740738
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||||||||| ||||| ||||||||  ||||| ||||||||| || ||| ||||||    
T  44740802 aattgattatgacagaattaattttgagagaattagtttatatttggatacaataatgtagaatt 44740738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 707
Target Start/End: Original strand, 11050534 - 11050584
Alignment:
Q  657 gaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||||||||||| ||||||||| | |||| | |||||||||||    
T  11050534 gaattgattttaagagaatttatttatgttagaatacaaggatgcagaatt 11050584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 693
Target Start/End: Original strand, 46033131 - 46033181
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||| ||| |||||||||||| | |||||||||||||||||| ||||    
T  46033131 aattgattctgatagaattgattttgaaagaattgatttatgtttgaatac 46033181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 666
Target Start/End: Original strand, 7592683 - 7592736
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    ||||||||||| || |||||||| | | |||||||||| |||||||||||||||    
T  7592683 aattgattctgacagaattgattttgacagaattgattctgacagaattgattt 7592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 45180031 - 45179982
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggata 692  Q
    |||||||| ||||| |||||||||| ||| |||| |||||||||||||||    
T  45180031 aattgattttgacataattgattttgagataattcatttatgtttggata 45179982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 92283 - 92182
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||  |||| || ||||||    
T  92283 tttggatataattgattctgacataattgattctgatataattgattatgacagaattgattttgagagatttgatttatgttt--atacaataatgcag 92186  T
Q  704 aatt 707  Q
    ||||    
T  92185 aatt 92182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 32496559 - 32496665
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagag---aattgatttatgtttggatacgatgatg 700  Q
    |||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||| || |||    
T  32496559 tttggatagaattgattctgagataattgattctgatagaattgattatgacagaattgattttgagagaataattgatttatgtttggatacaataatg 32496658  T
Q  701 cagaatt 707  Q
    || ||||    
T  32496659 cataatt 32496665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 44003386 - 44003283
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||| ||| |||||||| || ||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || ||||||    
T  44003386 tttgaatataattgattatgacataattgattctgatagaattgattataacataattgattttgagagaattgatttacgtttggatacaataatgcag 44003287  T
Q  704 aatt 707  Q
    ||||    
T  44003286 aatt 44003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 608 - 707
Target Start/End: Original strand, 35457542 - 35457641
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| |||||||||||  | || ||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  35457542 gatataattgattctgatagaactgactctgatagaattgattatgacataattgattttgagagaattgatttatgtttggatacaataatgcagaatt 35457641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 693
Target Start/End: Original strand, 33597562 - 33597651
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||| ||| ||||||||||| || |||||||||| |||||||||||| ||  |||||||||||| |||||||||||||||||||||||||    
T  33597562 tttgaatagaattgattctgacaaaattgattctgatagaattgattctggtagaattgattttgagagaattgatttatgtttggatac 33597651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 7474238 - 7474170
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  7474238 atagaattgattctgacagaattgattttgagagaattgatttatgtttggatacaataatgcagaatt 7474170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 707
Target Start/End: Complemental strand, 13896720 - 13896621
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||| || |||||||||| |||||||||||| | |||||||| ||| | ||||||||||||||||||||||||| || ||| ||||||    
T  13896720 gatagaattgattctgacagaattgattctgatagaattgattctaacagaatttattctgagagaattgatttatgtttggatacaataatgtagaatt 13896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 707
Target Start/End: Complemental strand, 14037337 - 14037238
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||| || |||||||||| |||||||||||| | |||||||| ||| | ||||||||||||||||||||||||| || ||| ||||||    
T  14037337 gatagaattgattctgacagaattgattctgatagaattgattctaacagaatttattctgagagaattgatttatgtttggatacaataatgtagaatt 14037238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 31686282 - 31686376
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  31686282 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 31686376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 40255244 - 40255150
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  40255244 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 40255150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 44282909 - 44282815
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  44282909 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 44282815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 19861004 - 19860901
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    ||||||||||||||||| || ||||||||||| | ||| || ||||| ||| | |||||||||| |||||||||||||| |||||||||| || |||||     
T  19861004 tttggataaaattgattatgacataattgattatgatataactgattttgaaataattgattttgagagaattgatttacgtttggatacaataatgcaa 19860905  T
Q  704 aatt 707  Q
    ||||    
T  19860904 aatt 19860901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 43341652 - 43341731
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| ||| |||||||| ||||| |||||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  43341652 aattgattctgataaaattgattctgacataattgattttgagataattgatttatgtttggatacaataatgcagaatt 43341731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 14380841 - 14380747
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| |||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  14380841 aatttattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 14380747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 31787384 - 31787290
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  31787384 aattgattctgacagaattgattctgaaagaattgattttggcagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 31787290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 643 - 707
Target Start/End: Complemental strand, 17481495 - 17481431
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  17481495 aattgattctgacataattgattttgagagaattgatttatgtttggatacaataatgcagaatt 17481431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 37640137 - 37640218
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| | || ||||||| ||| |||||||||| ||| ||||||||||||||||||||||| || ||||| ||||    
T  37640137 ataattgattctgacagtattgattctgatagaattgattgtaatagaattgatttatgtttggatacaataatgcataatt 37640218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 628 - 692
Target Start/End: Complemental strand, 43695750 - 43695686
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggata 692  Q
    |||||||||||  |||||||||| ||||| |||||||||| | ||||||||||||||||||||||    
T  43695750 aattgattctaggagaattgattctgacataattgattttgaaagaattgatttatgtttggata 43695686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 655 - 696
Target Start/End: Original strand, 2442635 - 2442676
Alignment:
Q  655 cagaattgattttaagagaattgatttatgtttggatacgat 696  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  2442635 cagaattgattttgagagaattgatttatgtttggatacgat 2442676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 16765668 - 16765749
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||   ||||||||||| | |||||||| ||||| ||||||||||||||||||| ||||| || ||| ||||||    
T  16765668 ataattgattccggtagaattgattctaacagaattaattttgagagaattgatttatgtttagatacaataatgtagaatt 16765749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 37640130 - 37640192
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||||||| ||||||||||| ||  ||||||||| |||||||||||| | | |||||||||||    
T  37640130 tttggatataattgattctgacagtattgattctgatagaattgattgtaatagaattgattt 37640192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 26827119 - 26827222
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||||||||||||||| || |||||||| | ||| |||||||||||||| |||||||||| |||||||| |||||||||||||||| ||  |||||    
T  26827119 tttggataaaattgattctgacagaattgattatgataaaattgattatgacataattgattttgagagaatttatttatgtttggatacaatattgcag 26827218  T
Q  704 aatt 707  Q
    ||||    
T  26827219 aatt 26827222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 609 - 707
Target Start/End: Original strand, 25472133 - 25472231
Alignment:
Q  609 ataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||||||  | |||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  25472133 ataaaattgattctgatagaattgattttgatagaattgattttgacagaattgattttgagagaattgatttatgtttggatacaataatgcataatt 25472231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 608 - 707
Target Start/End: Complemental strand, 30825891 - 30825792
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| ||||||||||||||||||||||| | ||| |||||||| ||||| |||| |||||||||||| |||||| ||||||||||| || ||||||||||    
T  30825891 gatagaattgattctggcataattgattttgataaaattgattctgacaaaattaattttaagagaaatgatttctgtttggatacaataatgcagaatt 30825792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 607 - 707
Target Start/End: Complemental strand, 37371401 - 37371301
Alignment:
Q  607 ggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaat 706  Q
    ||||| ||||||||||   | |||||||| | |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| || |||||||||    
T  37371401 ggatataattgattctaatagaattgattttgatagaattgattctgacggaattgattttgagagaattgatttatgtttggatacaataatgcagaat 37371302  T
Q  707 t 707  Q
    |    
T  37371301 t 37371301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 47085221 - 47085300
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  47085221 aattgattctgataaaattgattatgacataattgattttgagagaattgatttatgtttggatacaataatgcaaaatt 47085300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 31011958 - 31012052
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  31011958 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 31012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 629 - 693
Target Start/End: Original strand, 30139210 - 30139274
Alignment:
Q  629 attgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  30139210 attgattctgatagaattgattctgacagaattgattttcagataattgatttatgtttggatac 30139274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 12910630 - 12910551
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||  || ||||||||||    
T  12910630 aattgattctgatataattgattctgacagaattgattctgagagaattgatttatgtttggatataataatgcagaatt 12910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 25340939 - 25341033
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||| |||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  25340939 aattaattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 25341033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 628 - 693
Target Start/End: Original strand, 298049 - 298113
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  298049 aattgattatgatagaattgattctgacagaattgatttt-agagaattgatttatgtttggatac 298113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 707
Target Start/End: Complemental strand, 26827078 - 26827009
Alignment:
Q  638 aatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||| || ||||||||||    
T  26827078 aatagaattgattctgacaaaattgattttgagagaattggtttatgtttggatacaataatgcagaatt 26827009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 643 - 702
Target Start/End: Original strand, 20388767 - 20388826
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgca 702  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||    
T  20388767 aattgattatgacagaattgattttaagataattgatttacgtttggatacaataatgca 20388826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 15000578 - 15000510
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||| |||  || ||||||||||    
T  15000578 atagaattgattctgacagaattgattttgagataattgatttatgtttgaataaaataatgcagaatt 15000510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 693
Target Start/End: Complemental strand, 32451472 - 32451406
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattga-ttttaagagaattgatttatgtttggatac 693  Q
    |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||||| |||||    
T  32451472 aattgattctgatagaattgattataacataattgatttttgagagaattgatttatgtttcgatac 32451406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 707
Target Start/End: Complemental strand, 45203207 - 45203145
Alignment:
Q  645 ttgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||||| ||| |||||||||| |||||||||||||| ||||| || ||||||||||    
T  45203207 ttgattatgacaggattaattttaagaggattgatttatgtttagatacaataatgcagaatt 45203145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 707
Target Start/End: Complemental strand, 4036044 - 4035976
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| | ||  |||||||||| ||||||||||||||||||||||||| || ||| ||||||    
T  4036044 atagaattgattctaacgtaattgattttgagagaattgatttatgtttggatacaataatgtagaatt 4035976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 707
Target Start/End: Original strand, 25191241 - 25191320
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | |||||||||| ||| | |||||||||| |||||| | |||||||||||||||| || ||| ||||||    
T  25191241 aattgattctgaaagaattgattttgatataattgattttgagagaacttatttatgtttggatacaataatgtagaatt 25191320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 626 - 681
Target Start/End: Original strand, 25472120 - 25472175
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||||||||| |||||||| ||| |||||||||||| | |||||||||||    
T  25472120 ataattgattctaataaaattgattctgatagaattgattttgatagaattgattt 25472175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 696
Target Start/End: Complemental strand, 41065449 - 41065408
Alignment:
Q  655 cagaattgattttaagagaattgatttatgtttggatacgat 696  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  41065449 cagaattgattttaagataattgatttatgtttgaatacgat 41065408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 681
Target Start/End: Complemental strand, 41715797 - 41715757
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  41715797 agaattgattttgatagaattgattttaagagaattgattt 41715757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 681
Target Start/End: Original strand, 30139192 - 30139247
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgattt 681  Q
    ||||||||||||||||| ||||||| ||| |||||||||| | | |||||||||||    
T  30139192 ataattgattctaatagtattgattctgatagaattgattctgacagaattgattt 30139247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 650
Target Start/End: Original strand, 1999611 - 1999657
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgatt 650  Q
    |||||| | ||||||||||| ||||||||||||| ||||||||||||    
T  1999611 tttggaaataattgattctgacataattgattcttatagaattgatt 1999657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 12910635 - 12910577
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||| |||||||||||  |||||||||||| | |||||||||| ||| |||||||||||    
T  12910635 gatagaattgattctgatataattgattctgacagaattgattctgagagaattgattt 12910577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 43664218 - 43664280
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||||||| |||||||||||  |||||||||| | ||| |||||||||||||| |||| ||||    
T  43664218 tttggatataattgattctgagataattgattttgataaaattgattatgacataattaattt 43664280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 681
Target Start/End: Original strand, 298034 - 298087
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgattt 681  Q
    |||||||| ||| |||||||||||||| |||||||||| | | |||||||||||    
T  298034 aattgattataaaagaattgattatgatagaattgattctgacagaattgattt 298087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Complemental strand, 37562710 - 37562665
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgatttatgtt 686  Q
    |||||||||| ||| |||||||| ||||||||||||||||| ||||    
T  37562710 agaattgattttgatagaattgagtttaagagaattgatttttgtt 37562665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 707
Target Start/End: Original strand, 43664225 - 43664306
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| | | |||||||| ||| | |||||||| | | | |||| |||||||||||||||| || ||||||||||    
T  43664225 ataattgattctgagataattgattttgataaaattgattatgacataattaatttatgtttggatacaataatgcagaatt 43664306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 4812 - 4731
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||    
T  4812 ataattgattctgatagaattgattctgacagaattgattttaacagaattgatttatgtttggatacaataatgtagaatt 4731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 604 - 707
Target Start/End: Original strand, 32422 - 32525
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| ||||||||||| |  |||||||| | |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| || |||||     
T  32422 tttggatagaattgattctgactgaattgattatgatagaattgattgtgacagaattgattttgagataattgatttatgtttggatacaataatgcat 32521  T
Q  704 aatt 707  Q
    ||||    
T  32522 aatt 32525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 693
Target Start/End: Complemental strand, 26575967 - 26575878
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||| ||| ||||||||||| || |||||||| | |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  26575967 tttgaatagaattgattctgacagaattgattttgatagaattgattctgatagaattgattttgagagaattgatttatgtttggatac 26575878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 628 - 693
Target Start/End: Original strand, 45275779 - 45275844
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  45275779 aattgattctgatagaattgattctgacagaattgattttgagagaattgatttatgtttggatac 45275844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 604 - 707
Target Start/End: Complemental strand, 8417399 - 8417296
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcag 703  Q
    |||||||| |||||||||||  |||||||||| | | |||||| ||| ||||| |||||||||| ||||||||||||||||||||||||  || ||||||    
T  8417399 tttggatataattgattctgaaataattgattttgagagaattaattctgacataattgattttgagagaattgatttatgtttggatataataatgcag 8417300  T
Q  704 aatt 707  Q
    ||||    
T  8417299 aatt 8417296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 194120 - 194026
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  194120 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 194026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 629448 - 629354
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | ||||||||||||||||||||||||| | | |||||||||||||||||| || | || ||||||||||    
T  629448 aattgattctgacagaattgattctgaaagaattgattatgacagaattgattctgacagaattgatttatgtttgaatgcaataatgcagaatt 629354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 30211318 - 30211224
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  30211318 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 30211224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 30982572 - 30982666
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  30982572 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 30982666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Original strand, 34773791 - 34773885
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  34773791 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 34773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 44240826 - 44240747
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | | |||||||| ||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||    
T  44240826 aattgattctgacaaaattgattctgatagaattgattctgagagaattgatttatgtttggatacaataatgcagaatt 44240747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 604 - 666
Target Start/End: Complemental strand, 11071201 - 11071139
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||| ||| |||||||||||    
T  11071201 tttggataaaattgattctggcagaattgattctgatataattgattttgatagaattgattt 11071139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 669
Target Start/End: Original strand, 36820920 - 36820981
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaa 669  Q
    |||||||||||||||| || |||||||||| |||||| ||||| ||||||||||||||||||    
T  36820920 gataaaattgattctgacagaattgattctgatagaactgattctgacagaattgattttaa 36820981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 643 - 707
Target Start/End: Complemental strand, 2026214 - 2026150
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||| ||||| || ||||||||||    
T  2026214 aattgattctgaaagaattgattttgagagaattgatttatgttttgatacaataatgcagaatt 2026150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 628 - 693
Target Start/End: Original strand, 23018245 - 23018310
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatac 693  Q
    |||||||||| |||||||||||| | | |||||||||| ||||| |||||||||| ||||||||||    
T  23018245 aattgattctgatagaattgattctaatagaattgattgtaagataattgatttacgtttggatac 23018310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 643 - 707
Target Start/End: Original strand, 35801708 - 35801772
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||||| |||||||||| | | |||||||||||||||||| |||| || ||||||||||    
T  35801708 aattgattatgatagaattgattgtgacagaattgatttatgtttgaatacaataatgcagaatt 35801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 707
Target Start/End: Complemental strand, 11071192 - 11071113
Alignment:
Q  628 aattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||   |||||||||| ||| | |||||||||| | ||||||||||||||||||||||| || || |||||||    
T  11071192 aattgattctggcagaattgattctgatataattgattttgatagaattgatttatgtttggatacaataatacagaatt 11071113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 707
Target Start/End: Original strand, 17073628 - 17073691
Alignment:
Q  644 attgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||| ||| |||||||||||| | ||||||| ||||||||||||||| || ||||||||||    
T  17073628 attgattctgatagaattgattttgaaagaattggtttatgtttggatacaataatgcagaatt 17073691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 707
Target Start/End: Complemental strand, 17574642 - 17574579
Alignment:
Q  644 attgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||| ||| |||||||||||| | ||||||| ||||||||||||||| || ||||||||||    
T  17574642 attgattctgatagaattgattttgaaagaattggtttatgtttggatacaataatgcagaatt 17574579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 650
Target Start/End: Original strand, 23018236 - 23018282
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgatt 650  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||    
T  23018236 tttggataaaattgattctgatagaattgattctaatagaattgatt 23018282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 44240831 - 44240773
Alignment:
Q  608 gataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||| ||||||||||| || |||||||||| |||||||||||| ||| |||||||||||    
T  44240831 gatagaattgattctgacaaaattgattctgatagaattgattctgagagaattgattt 44240773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 665
Target Start/End: Complemental strand, 308957 - 308905
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgatt 665  Q
    ||||||||||| || |||||||||| | |||||||||| ||||||||||||||    
T  308957 aattgattctgacagaattgattctgaaagaattgattttgacagaattgatt 308905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 691
Target Start/End: Complemental strand, 924735 - 924683
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggat 691  Q
    |||||||||||| |||| ||| ||||||| ||| |||||||||||||||||||    
T  924735 atagaattgattttgaccgaaatgattttgagataattgatttatgtttggat 924683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 604 - 666
Target Start/End: Original strand, 45275770 - 45275832
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattt 666  Q
    |||||||| |||||||||||  | |||||||||| | |||||||||| ||| |||||||||||    
T  45275770 tttggatagaattgattctgatagaattgattctgacagaattgattttgagagaattgattt 45275832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Complemental strand, 26243251 - 26243206
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgatttatgtt 686  Q
    |||||||||| ||| |||||||| ||||||||||||||||| ||||    
T  26243251 agaattgattttgatagaattgagtttaagagaattgatttttgtt 26243206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 613 - 707
Target Start/End: Complemental strand, 30019954 - 30019860
Alignment:
Q  613 aattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| || |||||||||| | |||||||||| |||||||||||||| | | ||||||||||||||||||||| | || ||||||||||    
T  30019954 aattgattctgacagaattgattctgaaagaattgattttgacagaattgattctgacagaattgatttatgtttggatgcaataatgcagaatt 30019860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 604 - 696
Target Start/End: Complemental strand, 27825736 - 27825646
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgat 696  Q
    |||||||| |||||||| ||| |||||||||||| |||||||||||  ||||| |||||||||| |||||||||||||||||||||| |||||    
T  27825736 tttggatataattgatt-tggtataattgattctgatagaattgatc-tgacataattgattttgagagaattgatttatgtttggacacgat 27825646  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 626 - 707
Target Start/End: Complemental strand, 10683886 - 10683805
Alignment:
Q  626 ataattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | ||| |||||||| |||||||||||||||| ||||||||||||||||| | ||| | || ||||||||||    
T  10683886 ataattgattttgatataattgattctgacagaattgattttgagagaattgatttatgtctcgatgcaataatgcagaatt 10683805  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 680
Target Start/End: Complemental strand, 4147540 - 4147464
Alignment:
Q  604 tttggataaaattgattctggcataattgattctaatagaattgattatgacagaattgattttaagagaattgatt 680  Q
    |||||||| ||||||||||| || |||||||||| ||||||||||||    || |||||||||| ||||||||||||    
T  4147540 tttggatagaattgattctgacagaattgattctgatagaattgattccatcataattgattttgagagaattgatt 4147464  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 707
Target Start/End: Original strand, 20837890 - 20837970
Alignment:
Q  627 taattgattctaatagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    ||||||||||| |||||||||||| | |||||||||||||| | | ||||||||||||||  ||||| || ||||| ||||    
T  20837890 taattgattctgatagaattgattcttacagaattgattttgaaaaaattgatttatgttatgatacaataatgcataatt 20837970  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 707
Target Start/End: Original strand, 21515110 - 21515161
Alignment:
Q  656 agaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||||| | | ||||||||||||||||||||||| || ||||||||||    
T  21515110 agaattgattctgacagaattgatttatgtttggatacaataatgcagaatt 21515161  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 2166408 - 2166375
Alignment:
Q  387 ttactcttctcactttcaaaatttctcattttcg 420  Q
    |||||||| |||||||||||||||||||||||||    
T  2166408 ttactcttgtcactttcaaaatttctcattttcg 2166375  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 2178041 - 2178008
Alignment:
Q  387 ttactcttctcactttcaaaatttctcattttcg 420  Q
    |||||||| |||||||||||||||||||||||||    
T  2178041 ttactcttgtcactttcaaaatttctcattttcg 2178008  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 692
Target Start/End: Original strand, 301665 - 301714
Alignment:
Q  643 aattgattatgacagaattgattttaagagaattgatttatgtttggata 692  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  301665 aattgattctgacagaattgattttaagataattgatttacgtttggata 301714  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 707
Target Start/End: Original strand, 9170 - 9238
Alignment:
Q  639 atagaattgattatgacagaattgattttaagagaattgatttatgtttggatacgatgatgcagaatt 707  Q
    |||||||  ||||||| ||||||||| || | ||||||||||||||||||||||| || ||||| ||||    
T  9170 atagaatgaattatgatagaattgatattgaaagaattgatttatgtttggatacaataatgcataatt 9238  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 680
Target Start/End: Complemental strand, 17564 - 17525
Alignment:
Q  641 agaattgattatgacagaattgattttaagagaattgatt 680  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  17564 agaattgattatgacagaactgattttgagagaattgatt 17525  T

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