View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_12 (Length: 391)

Name: NF13783_low_12
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_12
NF13783_low_12
[»] chr2 (5 HSPs)
chr2 (4-375)||(26211744-26212118)
chr2 (76-125)||(22010115-22010164)
chr2 (34-106)||(25078626-25078698)
chr2 (78-138)||(26059794-26059854)
chr2 (76-125)||(6300055-6300104)
[»] chr7 (2 HSPs)
chr7 (76-125)||(107499-107548)
chr7 (76-124)||(7797596-7797644)
[»] chr6 (4 HSPs)
chr6 (79-124)||(27870090-27870135)
chr6 (76-120)||(35235465-35235509)
chr6 (76-123)||(12885551-12885598)
chr6 (76-125)||(535838-535887)
[»] chr4 (5 HSPs)
chr4 (76-125)||(4124803-4124852)
chr4 (77-118)||(10983432-10983473)
chr4 (48-120)||(7937154-7937229)
chr4 (78-111)||(6731207-6731240)
chr4 (80-120)||(2803717-2803757)
[»] chr1 (6 HSPs)
chr1 (76-125)||(32854616-32854665)
chr1 (76-120)||(52922483-52922527)
chr1 (76-127)||(30202821-30202872)
chr1 (86-124)||(28542134-28542172)
chr1 (34-70)||(32854681-32854717)
chr1 (74-118)||(34142512-34142556)
[»] chr3 (2 HSPs)
chr3 (84-125)||(53525695-53525736)
chr3 (76-114)||(3876828-3876866)
[»] chr5 (2 HSPs)
chr5 (78-125)||(6668775-6668822)
chr5 (84-125)||(25021138-25021179)
[»] chr8 (1 HSPs)
chr8 (88-124)||(3185737-3185773)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 4 - 375
Target Start/End: Complemental strand, 26212118 - 26211744
Alignment:
Q  4 aaccactttggtatccagattatgaggcgatgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaattttatggactaaa 103  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26212118 aaccactttgatattcagattatgaggcgatgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaattttatggactaaa 26212019  T
Q  104 ttgactaacaaaaaacacat--ttaagtaacaaaatatacatttgaggatcaaaaatgatt-ataaagcagcaattgaagatgtttcttcaattttgatg 200  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  26212018 ttgactaacaaaaaacacatatttaagtaacaaaatatacatttgaggatcaaaaatgatttataaagcagcaattgaagatgtttcttcaattttgata 26211919  T
Q  201 gattcaaggacacattcacatgccaaagtggatgcttatacttctaattcacataccaaagtggatgcttacgcttccaaggtagaaaaccaggaacaga 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26211918 gattcaaggacacattcacataccaaagtggatgcttatacttctaattcacataccaaagtggatgcttacgcttccaaggtagaaaaccaggaacaga 26211819  T
Q  301 atggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26211818 atggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaag 26211744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 22010115 - 22010164
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  22010115 tcttttgttagtaattttatggacgaaattgacgaacaaaaaacacattt 22010164  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 25078626 - 25078698
Alignment:
Q  34 tgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaattttatggactaaattg 106  Q
    |||||||||  ||| |||||||||| || ||| |||||||| ||||||||| | |||||||||||||| ||||    
T  25078626 tgtcattatggtctatgaatgtatcgaaattgtaaatacatctcttttgttagcaattttatggactatattg 25078698  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 26059854 - 26059794
Alignment:
Q  78 ttttgtttgtaattttatggactaaattgactaacaaaaaacacatttaagtaacaaaata 138  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||| || | |||||||    
T  26059854 ttttgtttgtaattttatgaattaaattgactaatgaaaaacacatttgaggatcaaaata 26059794  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 6300055 - 6300104
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||||||| ||||||||  | ||||||||||||| ||||||||||||    
T  6300055 tcttttgtttgaaattttatatattaaattgactaactaaaaacacattt 6300104  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 107499 - 107548
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  107499 tcttttgttagtaattttatggactaaaatgactaacaaaagacacattt 107548  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7797644 - 7797596
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacatt 124  Q
    ||||||||| |||||||  |||||||||  |||||||||||||||||||    
T  7797644 tcttttgttagtaatttcttggactaaaccgactaacaaaaaacacatt 7797596  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 27870135 - 27870090
Alignment:
Q  79 tttgtttgtaattttatggactaaattgactaacaaaaaacacatt 124  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  27870135 tttgtttgtaatgttatggactaaattgcctaacaaaaaacacatt 27870090  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 35235465 - 35235509
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaaca 120  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||    
T  35235465 tcttttgtttgtagttttagggactaaattaactaacaaaaaaca 35235509  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 12885598 - 12885551
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacat 123  Q
    |||||||||||||||||||| ||  ||||| |||||||||||||||||    
T  12885598 tcttttgtttgtaattttatagatgaaatttactaacaaaaaacacat 12885551  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 535887 - 535838
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||||| ||||||||||||||| ||||||| |||  |||||||||||    
T  535887 tcttttgttagtaattttatggactgaattgaccaacggaaaacacattt 535838  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 4124852 - 4124803
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  4124852 tcttttgttagtaatttcatggactaaattgaccaacaaaaaacacattt 4124803  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 10983473 - 10983432
Alignment:
Q  77 cttttgtttgtaattttatggactaaattgactaacaaaaaa 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  10983473 cttttgtttgtaattttatggactaaaatgactaacaaaaaa 10983432  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 7937154 - 7937229
Alignment:
Q  48 ttgaatgtatcaaagttgcaaataca--tatcttttgttt-gtaattttatggactaaattgactaacaaaaaaca 120  Q
    |||||||||||||| |||||||||||  |||||||| ||| ||||||||||||| |||||||  |||| |||||||    
T  7937154 ttgaatgtatcaaaattgcaaatacaagtatctttttttttgtaattttatggattaaattggttaaccaaaaaca 7937229  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 6731207 - 6731240
Alignment:
Q  78 ttttgtttgtaattttatggactaaattgactaa 111  Q
    |||||| |||||||||||||||||||||||||||    
T  6731207 ttttgtgtgtaattttatggactaaattgactaa 6731240  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 2803717 - 2803757
Alignment:
Q  80 ttgtttgtaattttatggactaaattgactaacaaaaaaca 120  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  2803717 ttgttggtaattttatagactatattgactaacaaaaaaca 2803757  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 32854665 - 32854616
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  32854665 tcttttgtttgtaattctatgaactaaattgactagcaaaaaacacattt 32854616  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 52922483 - 52922527
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaaca 120  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  52922483 tcttttgtttgtagttttagggactaaattgactaacaaaaaaca 52922527  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 30202872 - 30202821
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacatttaa 127  Q
    ||||||||| ||||||||||| ||||||||||| ||  ||||||||||||||    
T  30202872 tcttttgttagtaattttatgaactaaattgacaaatgaaaaacacatttaa 30202821  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 28542172 - 28542134
Alignment:
Q  86 gtaattttatggactaaattgactaacaaaaaacacatt 124  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  28542172 gtaattttattgactaaattgactaaaaaaaaacacatt 28542134  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 32854717 - 32854681
Alignment:
Q  34 tgtcattatactctttgaatgtatcaaagttgcaaat 70  Q
    |||||||||| || |||||||||||||||||||||||    
T  32854717 tgtcattatagtccttgaatgtatcaaagttgcaaat 32854681  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 34142512 - 34142556
Alignment:
Q  74 tatcttttgtttgtaattttatggactaaattgactaacaaaaaa 118  Q
    |||||||||||  ||||||||||||||||||| || |||||||||    
T  34142512 tatcttttgttaataattttatggactaaattaaccaacaaaaaa 34142556  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 53525736 - 53525695
Alignment:
Q  84 ttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  53525736 ttgtaattttatggactaaattgaataacgaaaaacacattt 53525695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 3876866 - 3876828
Alignment:
Q  76 tcttttgtttgtaattttatggactaaattgactaacaa 114  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  3876866 tcttttgtttgtaattttatggacgaaattgaccaacaa 3876828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 6668775 - 6668822
Alignment:
Q  78 ttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||    
T  6668775 ttttgttagtaattttatggattaaattgacaaacgaaaaacacattt 6668822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 25021179 - 25021138
Alignment:
Q  84 ttgtaattttatggactaaattgactaacaaaaaacacattt 125  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  25021179 ttgtaatattatggactaaattgaccaacgaaaaacacattt 25021138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 3185773 - 3185737
Alignment:
Q  88 aattttatggactaaattgactaacaaaaaacacatt 124  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  3185773 aattttatggactaaattgacaaacgaaaaacacatt 3185737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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