View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_17 (Length: 339)

Name: NF13783_low_17
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_17
NF13783_low_17
[»] scaffold0438 (2 HSPs)
scaffold0438 (16-322)||(12432-12740)
scaffold0438 (267-322)||(9318-9373)
[»] chr8 (3 HSPs)
chr8 (16-322)||(26342271-26342579)
chr8 (16-322)||(26294940-26295248)
chr8 (16-322)||(26308197-26308505)
[»] chr5 (2 HSPs)
chr5 (107-247)||(33953516-33953648)
chr5 (16-109)||(33953380-33953479)
[»] chr3 (8 HSPs)
chr3 (150-317)||(1188678-1188847)
chr3 (167-291)||(147612-147733)
chr3 (182-286)||(1206321-1206421)
chr3 (157-260)||(1303207-1303310)
chr3 (208-315)||(1205763-1205866)
chr3 (256-317)||(1301246-1301307)
chr3 (157-201)||(1188205-1188249)
chr3 (128-319)||(5358679-5358860)
[»] chr2 (1 HSPs)
chr2 (18-83)||(43865743-43865808)


Alignment Details
Target: scaffold0438 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 12740 - 12432
Alignment:
Q  16 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaa--atgcatcgatactttgaaaaacttctgtatccttcaccatgttgtcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12740 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttctgtatcgttcaccatgttgtcc 12641  T
Q  114 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12640 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 12541  T
Q  214 gaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540 gaactcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 12441  T
Q  314 ggactacat 322  Q
    |||||||||    
T  12440 ggactacat 12432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 9373 - 9318
Alignment:
Q  267 aagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggactacat 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9373 aagaaaaaagaacgttaatccttttgacaatatcttcaataatttaaggactacat 9318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 26342579 - 26342271
Alignment:
Q  16 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaa--atgcatcgatactttgaaaaacttctgtatccttcaccatgttgtcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  26342579 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttctgtatcgttcaccatgttgtcc 26342480  T
Q  114 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342479 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 26342380  T
Q  214 gaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342379 gaactcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 26342280  T
Q  314 ggactacat 322  Q
    |||||||||    
T  26342279 ggactacat 26342271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 26295248 - 26294940
Alignment:
Q  16 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaa--atgcatcgatactttgaaaaacttctgtatccttcaccatgttgtcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  26295248 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttcggtatccttcaccatcttgtcc 26295149  T
Q  114 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26295148 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 26295049  T
Q  214 gaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26295048 gaactcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaa 26294949  T
Q  314 ggactacat 322  Q
    |||||||||    
T  26294948 ggactacat 26294940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 26308505 - 26308197
Alignment:
Q  16 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaa--atgcatcgatactttgaaaaacttctgtatccttcaccatgttgtcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  26308505 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatccatactttgaaaaacttcggtatccttcaccatcttgtcc 26308406  T
Q  114 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26308405 aaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcat 26308306  T
Q  214 gaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaa 313  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26308305 gaactcaaacaagctgttcaattttagtttgccaaacaaataaataaatcatcaagaaaaaagaacgttaatccttttgacaatatcttcaataatttaa 26308206  T
Q  314 ggactacat 322  Q
    |||||||||    
T  26308205 ggactacat 26308197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 33953516 - 33953648
Alignment:
Q  107 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggc 206  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||    
T  33953516 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtatt--------aacaaattcatattacaagc 33953607  T
Q  207 cttgcatgaactcaaacaagctgttcaattttagtttacca 247  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  33953608 cttgcatgaactcaaacaagctgttgatttttagtttacca 33953648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 33953380 - 33953479
Alignment:
Q  16 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgta--aatgc----atcgatactttgaaaaacttctgtatccttcaccatgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    |||||||||||||||||||| ||||||||||||||||||    
T  33953380 acccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatcgatactttgaaaaacttttgtatccttcaccatgtt 33953479  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 1188847 - 1188678
Alignment:
Q  150 acacactgttaagttaa-----ggaacttgtattaac-tttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagttt 243  Q
    |||||||||||||||||     ||||||||||||||| ||||||||| ||||| ||||  |||||||||||||||||||| ||||||||| |||||||||    
T  1188847 acacactgttaagttaattccaggaacttgtattaacctttccaacacattcacattattggccttgcatgaactcaaacgagctgttcatttttagttt 1188748  T
Q  244 accaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggac 317  Q
    |||| ||    |||||||||||||||||||||||||||||||| ||  |||||| ||||||| | |||||||||    
T  1188747 accagac----aaataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaaaagtttaaggac 1188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 147733 - 147612
Alignment:
Q  167 ggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatc 266  Q
    ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||| ||    ||||||||||||    
T  147733 ggaacttgtattaactttcaaacaaattcatattataggtcctgcatgaactcaaacaagcttttcatttttagtttaccagac----aaataaatcatc 147638  T
Q  267 aag-aaaaaagaaagttaatcctttt 291  Q
    ||| |||||| |||||||||||||||    
T  147637 aagaaaaaaataaagttaatcctttt 147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 1206421 - 1206321
Alignment:
Q  182 tttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagt 281  Q
    ||||||||| ||||| ||||  ||||||||||||||||||||||| |||||| ||||||||||||| ||    |||||||||||||||||||||||||||    
T  1206421 tttccaacacattcacattattggccttgcatgaactcaaacaagttgttcatttttagtttaccagac----aaataaatcatcaagaaaaaagaaagt 1206326  T
Q  282 taatc 286  Q
    |||||    
T  1206325 taatc 1206321  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 1303207 - 1303310
Alignment:
Q  157 gttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataa 256  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||   || |||||||||| ||||||||||||| | ||||| || |||| ||||||||    
T  1303207 gttaagttcaggaacttgtattaactttccaacaaattcaaattatgagctttgcatgaacacaaacaagctgttgatttttatttaaccagacaaataa 1303306  T
Q  257 ataa 260  Q
    ||||    
T  1303307 ataa 1303310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 1205866 - 1205763
Alignment:
Q  208 ttgcatgaactcaaacaagctgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaata 307  Q
    |||||||||| ||||||||||||| | ||||| || |||| ||||||||||    |||||| ||| |||||| |||||||||  |||||||||| |||||    
T  1205866 ttgcatgaacacaaacaagctgttgatttttatttaaccagacaaataaat----catcaataaataagaaatttaatccttcagacaatatctccaata 1205771  T
Q  308 atttaagg 315  Q
    ||||||||    
T  1205770 atttaagg 1205763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 1301246 - 1301307
Alignment:
Q  256 aataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggac 317  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||||||| ||||||||    
T  1301246 aataaatcatcaagaaaaaagaaagttaatcgttcagacaatttcttcaataacttaaggac 1301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1188249 - 1188205
Alignment:
Q  157 gttaagttaaggaacttgtattaactttccaacaaattcatatta 201  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  1188249 gttaagttcaggaacttgtattaactttccaacaaattcagatta 1188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 5358679 - 5358860
Alignment:
Q  128 ctggtttcaattgaaagaaattacacactgttaagttaaggaacttgtattaactttccaacaaattcatattacaggccttgcatgaactcaaacaagc 227  Q
    |||||||||||||||| ||    |||||||||||||  |  ||||||||| |  ||||||||||||||| ||||   ||||| |  ||||||||||||||    
T  5358679 ctggtttcaattgaaaaaa----cacactgttaagtccaacaacttgtatcatatttccaacaaattcagattatgagccttactagaactcaaacaagc 5358774  T
Q  228 tgttcaattttagtttaccaaacaaataaataaatcatcaagaaaaaagaaagttaatccttttgacaatatcttcaataatttaaggacta 319  Q
    || | ||||||  ||||||| ||    || |||||||||||||| |||||||| ||||| ||  | ||| |||||||| ||||||| |||||    
T  5358775 tggt-aatttttatttaccagac----aagtaaatcatcaagaacaaagaaagctaatcattcag-caacatcttcaacaatttaaagacta 5358860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 43865743 - 43865808
Alignment:
Q  18 ccataaataagtctagcaagtagagaaataagcaaaagtgttcttgt--aaatgcatcgatactttga 83  Q
    |||| ||||||||||||||||  |||||| |||||||||||||||||   |||||||| |||||||||    
T  43865743 ccatgaataagtctagcaagt--agaaatgagcaaaagtgttcttgttataatgcatccatactttga 43865808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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