View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_18 (Length: 337)
Name: NF13783_low_18
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 860326 - 860523
Alignment:
| Q |
18 |
aaaattctttgtaggcatttcgtacactgtaaacaataatatcatagggctaaaagaattcttttggtttaaaaatttaagtgtaaactatttgcatttt |
117 |
Q |
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| T |
860326 |
aaaattctttgtaggcatttcgtacaccgtaaacaaaa---tcatagtgctagaagaattattttggtttaaaaatttaagtgtaa-ctatttgcatttt |
860421 |
T |
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| Q |
118 |
caactataaaaatgaaacaagttaaataaatgcatataaaattatatcctttctcttacgtgaatcaaaatatattttatgagagcaaatttttgaataa |
217 |
Q |
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| T |
860422 |
caactataaaaatgaaataagttaaatacatgcatttaaaattatatcctctctcttacgtgaatcaaaataaattttttgagatgaattttttgaataa |
860521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 867729 - 867584
Alignment:
| Q |
18 |
aaaattctttgtaggcattt-cgtacactgtaaacaat----aatatcatagggctaaaagaattcttttggtttaaaaatttaagtgtaaactatttgc |
112 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
867729 |
aaaattctttgtagtcattttcgtacaccgtaaacaattacaaatatcacagggctaaaagaattattttggtttgaaaatttaagtgtaa-ctatttgc |
867631 |
T |
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| Q |
113 |
attttcaactataaaaatgaaacaagttaaataaatgcatataaaat |
159 |
Q |
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| T |
867630 |
attttcaactataaaaatgaaataagttaaatacatgcatttaaaat |
867584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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