View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_2 (Length: 626)
Name: NF13783_low_2
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 39 - 612
Target Start/End: Original strand, 55013229 - 55013799
Alignment:
| Q |
39 |
agcaagaaaacaaaaagtggaaatgaatgagaataaaacaagttatttaagaaataaaataagatttgaaaaatataagcggtggggttggaannnnnnn |
138 |
Q |
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| T |
55013229 |
agcaagaaaacaaaaagtagaaataaatgagaataaaacaagttatttaagaaataaaataagatttgaaaaatataagccgtggggttggaattttttt |
55013328 |
T |
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| Q |
139 |
gcctcctctctctttaggagttaggacatgtcggtgtaatggatgaagtcacgatgcaccgttttacataagctttatagtttttgtcaaaattaccgtg |
238 |
Q |
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| T |
55013329 |
gcctc--ctctctttaggagttaggacatgtcggtgtaatggatgaagtcacgatgcaccgttttacataagctatatagtttttgtcaaaattactgtg |
55013426 |
T |
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| Q |
239 |
atttttcaaacatattgagaatccaagtatgcactattccatttattatatagtatcttcctacaagtttaacttgtgagaatcgacttgtgaacattta |
338 |
Q |
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| T |
55013427 |
atttttcaaacatattgagaatccaagcatgcactattccatttattatacagtatcttcctacaagtttaacttgtgagaatcgacttgtgaacattta |
55013526 |
T |
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| Q |
339 |
gcttattttgtgttttgtcgcattgaagtgtatatatgatataaaatgacgatcgatgacaactctgtctctaactgacaatttgtttaagtgactgaat |
438 |
Q |
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| T |
55013527 |
gcttattttgtgttttgtcgcattgaagtgtatagatgatataaaatgacgatcgatgacaactctgtctctaactgacaatttgtttaagtgactgaat |
55013626 |
T |
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| Q |
439 |
taattaaaagtaattcactaattcattcacgtgatcccgacacataatggaagtgttagattaattgcatctcgagaattttttgggctgaaatatgatt |
538 |
Q |
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| T |
55013627 |
taatt-aaagtaattcactaattcattcacgtgatcccgacacataatggaagtgttagattaattgcatctcgagaattttttgcgctgaaatatgatt |
55013725 |
T |
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| Q |
539 |
atgcttcaatgaacatcgaattatataggaaattgttttaattaaatctgtgaacaatactcaccagttacatc |
612 |
Q |
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| T |
55013726 |
atgcttcaatcaacatcgaattatataggaaattgttttaatgaaatctgtgaacaatactcaccagttacatc |
55013799 |
T |
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