View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_22 (Length: 324)
Name: NF13783_low_22
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_22 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 30037829 - 30037618
Alignment:
| Q |
12 |
tcaatgaacgaaggaagaggaggaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagagacgagtaccttaaca |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30037829 |
tcaatgaacgaaggaagaggctgaatgtgtaatcgacgatgaagaagaagaaacaaattgcgagtagaaggaacagagaagagagacgagtaccttaaca |
30037730 |
T |
|
| Q |
112 |
ttgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttttaccagaagaacga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30037729 |
ttgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttttaccagaagaacga |
30037630 |
T |
|
| Q |
212 |
ttcttgtctctt |
223 |
Q |
| |
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|||||||||||| |
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| T |
30037629 |
ttcttgtctctt |
30037618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 30153413 - 30153207
Alignment:
| Q |
14 |
aatgaacgaaggaagaggaggaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagagacgagtaccttaacatt |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30153413 |
aatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgcgagtagaaggaacagagaagagagacgagtaccttaacatt |
30153317 |
T |
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| Q |
114 |
gataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttttaccagaagaacgatt |
213 |
Q |
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| T |
30153316 |
gataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagtttttccagaagaacgatt |
30153217 |
T |
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| Q |
214 |
cttgtctctt |
223 |
Q |
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|||||||||| |
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| T |
30153216 |
cttgtctctt |
30153207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 30040121 - 30039948
Alignment:
| Q |
12 |
tcaatgaacgaaggaagaggaggaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagagacgagtaccttaaca |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30040121 |
tcaatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgagagtagaaggaacagagaagagagacgaataccttaaca |
30040025 |
T |
|
| Q |
112 |
ttgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
188 |
Q |
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| T |
30040024 |
ttgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagcgtaaatgaattttcgatttgg |
30039948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 30153178 - 30153089
Alignment:
| Q |
222 |
ttttcaaatattaataaaaggctggtgatttcctcgagnnnnnnnnnntccataacttttagttatattcagaacgtcatgatagaataa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
30153178 |
ttttcaaatattaataaaaggctggtgatttcctcgagaaaaaaaaaatccataacttttagttatattcacaacatcatcatagaataa |
30153089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 30037545 - 30037491
Alignment:
| Q |
270 |
tccataacttttagttatattcagaacgtcatgatagaataattactatcatttc |
324 |
Q |
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| T |
30037545 |
tccataacttttagttatattctgaacgtcatgatagaataattattatcatttc |
30037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 30148326 - 30148268
Alignment:
| Q |
130 |
tgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
188 |
Q |
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||||||| ||||||||||| |||||| |||||||||||||| | | || |||||||||| |
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| T |
30148326 |
tgcaacgattgtgaatgccatttctaaacactgacagtgtaaatgaatgttggatttgg |
30148268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 44953 - 45126
Alignment:
| Q |
12 |
tcaatgaacgaaggaagaggaggaatgtgtaatcgacgattaagaagaagaaacaaattgagagtagaaggaacagagaagagagacgagtaccttaaca |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44953 |
tcaatgaacgaaggaagaggctgaatgtgtaatcgacgat---gaagaagaaacaaattgagagtagaaggaacagagaagagagacgaataccttaaca |
45049 |
T |
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| Q |
112 |
ttgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
188 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| | | ||||| ||||||| |
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| T |
45050 |
ttgataactgagcttggatgcaacgattgtgaatgccgtttctaaacactgacagcgtaaatgaattttcgatttgg |
45126 |
T |
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