View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_23 (Length: 324)

Name: NF13783_low_23
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_23
NF13783_low_23
[»] chr3 (1 HSPs)
chr3 (16-309)||(3454996-3455289)
[»] chr5 (2 HSPs)
chr5 (11-309)||(8523128-8523418)
chr5 (16-309)||(1009610-1009895)
[»] chr8 (1 HSPs)
chr8 (19-309)||(42878212-42878494)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 3455289 - 3454996
Alignment:
Q  16 atccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttctttct 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3455289 atccagtttactagaaaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttctttct 3455190  T
Q  116 actagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaataca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3455189 actagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaaaaacaaaaatgaaatcaaattgggtaaacgtgaaattgaataca 3455090  T
Q  216 aggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3455089 aggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 3454996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 8523418 - 8523128
Alignment:
Q  11 cacagatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8523418 cacaaatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttc 8523319  T
Q  111 tttctactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattga 210  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8523318 tttctactagtacgaaccataattgcag--------aagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattga 8523227  T
Q  211 atacaaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 309  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8523226 atacaaggatcccaaataaaaatttaaagatcccaaatcagaaatactaggaattccaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 8523128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 1009610 - 1009895
Alignment:
Q  16 atccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttctttct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  1009610 atccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaataagaatagaatgaagaaggattgaattcaaagaacccttccttct 1009709  T
Q  116 actagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaataca 215  Q
    ||||| |||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1009710 actagcacgaaccataattgcag--------aagctttttattatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaataca 1009801  T
Q  216 aggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1009802 aggatcccaaataaaaatttaaagatcccaaatcagaaatactagaaattccaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 1009895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 42878494 - 42878212
Alignment:
Q  19 cagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttctttctact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  42878494 cagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaatgcaaacaaaaatagaatgaagaaggattgaattcaaaaaacccttctttctact 42878395  T
Q  119 agtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaatacaagg 218  Q
    |||| |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42878394 agtaggaaccataattgcag--------aagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaatacaagg 42878303  T
Q  219 atcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 309  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42878302 atcccaaataaaaatttaaagatcccaaatcagaaatactaggaattccaaaatttggcaacaaaagaatgaagaaggattgaaatcaaag 42878212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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