View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_low_24 (Length: 318)
Name: NF13783_low_24
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_24 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 48912437 - 48912750
Alignment:
| Q |
5 |
catttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
48912437 |
catttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatga |
48912536 |
T |
|
| Q |
105 |
gaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912537 |
gaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggat |
48912636 |
T |
|
| Q |
205 |
aatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912637 |
aatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaa |
48912736 |
T |
|
| Q |
305 |
ttaaagaatgtggt |
318 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
48912737 |
ttaaagaaggtggt |
48912750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 48958231 - 48957955
Alignment:
| Q |
5 |
catttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatga |
104 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
48958231 |
catttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatga |
48958132 |
T |
|
| Q |
105 |
gaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggat |
204 |
Q |
| |
|
|||||||||||| | |||| || |||||||||||||| |||||||| || ||| | || ||| ||| ||| | | ||||| | || | | ||| |
|
|
| T |
48958131 |
gaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaagat |
48958032 |
T |
|
| Q |
205 |
aatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtt |
281 |
Q |
| |
|
| ||| || |||| ||||||| ||||||||||| ||||||||||||||||| |||||| ||| | ||||| |||||| |
|
|
| T |
48958031 |
agtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagtt |
48957955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 48965414 - 48965161
Alignment:
| Q |
7 |
tttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgaga |
106 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| || ||||| ||| |||| |||||||| ||||| || ||||| |||||||||||||| ||||| || | |
|
|
| T |
48965414 |
tttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaa |
48965315 |
T |
|
| Q |
107 |
agttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataa |
206 |
Q |
| |
|
| |||||||| | |||| |||||||| ||||| || |||||||| |||||| | |||||| ||| |||||||||||| |||| | || |||| |
|
|
| T |
48965314 |
aactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatag |
48965215 |
T |
|
| Q |
207 |
tattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaat |
260 |
Q |
| |
|
|| ||||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
48965214 |
catagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaat |
48965161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 48974199 - 48974062
Alignment:
| Q |
11 |
tgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagtt |
110 |
Q |
| |
|
|||||||||| |||||||| ||||| || || || |||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| |
|
|
| T |
48974199 |
tgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagtt |
48974100 |
T |
|
| Q |
111 |
gataacacaggtgcatgggattggggtggaggtcggtg |
148 |
Q |
| |
|
|||||| ||||||| || ||||| |||||||| |||| |
|
|
| T |
48974099 |
gataactcaggtgcggggtattggtgtggaggttggtg |
48974062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 48961378 - 48961267
Alignment:
| Q |
7 |
tttatgacacattgtgggtggaattc--cactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatga |
104 |
Q |
| |
|
|||||||| ||||| |||||||| || ||| ||||||| | |||||||||| | |||||||| || ||||| | |||||||||||||| ||||| || |
|
|
| T |
48961378 |
tttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattctacaacga |
48961279 |
T |
|
| Q |
105 |
gaagttgataac |
116 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48961278 |
gaagttgataac |
48961267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 48951288 - 48951185
Alignment:
| Q |
47 |
ttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcgg |
146 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||| | || || || |||||||||||| | ||||| || |||| |||||| || ||||| || || |
|
|
| T |
48951288 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtagg |
48951189 |
T |
|
| Q |
147 |
tgca |
150 |
Q |
| |
|
|||| |
|
|
| T |
48951188 |
tgca |
48951185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 48967323 - 48967266
Alignment:
| Q |
227 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttgg |
284 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
48967323 |
gattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttgg |
48967266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 33396779 - 33396687
Alignment:
| Q |
11 |
tgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatg |
103 |
Q |
| |
|
||||||||||||| |||||||| || | || | ||| ||||||||| | |||||| | || ||||| ||| |||| |||||||||||||||| |
|
|
| T |
33396779 |
tgacacattgtggatggaattcaacattggaaggagtgagtgcagggttaccaatggtgacatggccaatgtatggtgaacaattttacaatg |
33396687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 6605 - 6900
Alignment:
| Q |
7 |
tttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgaga |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
6605 |
tttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaa |
6704 |
T |
|
| Q |
107 |
agttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataa |
206 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||| || ||| | || ||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6705 |
agttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatag |
6804 |
T |
|
| Q |
207 |
tattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc |
302 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||||| |||||||||||||||| | | ||||||||||||||||||| || ||||||||||| |
|
|
| T |
6805 |
tattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataaggctaaacatgc |
6900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 10587 - 10877
Alignment:
| Q |
7 |
tttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10587 |
tttatgacacattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgaga |
10686 |
T |
|
| Q |
107 |
agttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataa |
206 |
Q |
| |
|
|||||||||| || |||| |||||||||| ||| || |||||| || ||| || | |||||||||||| | ||||||| |||| |||||||| |
|
|
| T |
10687 |
agttgataacgcaagtgcgggggattgggggggaagtgggtgcagtagagtggtgcttagttggtattggggagaaagagaagttggtcgggagggatgg |
10786 |
T |
|
| Q |
207 |
tattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaa |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | || ||| |||||||| |||||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
10787 |
tattgagaaggttgtgaagagattgatggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataaggctaaa |
10877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 1545 - 1690
Alignment:
| Q |
5 |
catttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatga |
104 |
Q |
| |
|
||||| ||||||||||||||||||| || | ||||| ||||||||||| ||||||||||||| ||||| | ||| | || ||||| || || || |
|
|
| T |
1545 |
catttttgacacattgtgggtggaactctataaccgaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattctataacga |
1644 |
T |
|
| Q |
105 |
gaagttgataacacaggtgcatgggattggggtggaggtcggtgca |
150 |
Q |
| |
|
| ||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1645 |
aacgttgataactcaggtgcatgggattggagtggaagtcggtgca |
1690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 13448449 - 13448138
Alignment:
| Q |
6 |
atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgag |
105 |
Q |
| |
|
||||||||| ||||| ||| |||| || || || ||||| |||||||| || ||||||||||| ||||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
13448449 |
atttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgag |
13448350 |
T |
|
| Q |
106 |
aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggata |
205 |
Q |
| |
|
|| |||||||||| | | || ||||| || || ||||||||||| |||||| | || | |||| | | ||| ||| ||||| | || | || |||| |
|
|
| T |
13448349 |
aaactgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagata |
13448250 |
T |
|
| Q |
206 |
atattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaat |
305 |
Q |
| |
|
|| ||||||| ||| | | ||||||||||| |||||||||||||||| || ||||| | || ||||||||||||||| || ||||||| ||| || || |
|
|
| T |
13448249 |
gcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctat |
13448150 |
T |
|
| Q |
306 |
taaagaatgtgg |
317 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
13448149 |
tcaagaaggtgg |
13448138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 13440286 - 13439975
Alignment:
| Q |
6 |
atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgag |
105 |
Q |
| |
|
||||||||| ||||| ||| |||| || | ||| ||| | |||||||| || ||||||||||| ||||||||| | |||||||| ||||| ||||| ||| |
|
|
| T |
13440286 |
atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag |
13440187 |
T |
|
| Q |
106 |
aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggata |
205 |
Q |
| |
|
|| || ||||||| | | || ||||| ||||| |||||||||||||||||| | | | |||| ||| ||| ||||||||| |||| | ||||||| |
|
|
| T |
13440186 |
aaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggata |
13440087 |
T |
|
| Q |
206 |
atattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaat |
305 |
Q |
| |
|
| || ||||||| ||||| | |||||||||| | ||||||||||||| | || || || | || ||||| ||||||||| || || |||| ||| || || |
|
|
| T |
13440086 |
acatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctat |
13439987 |
T |
|
| Q |
306 |
taaagaatgtgg |
317 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
13439986 |
tcaagaaggtgg |
13439975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 284
Target Start/End: Complemental strand, 13454868 - 13454642
Alignment:
| Q |
58 |
gttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaat |
157 |
Q |
| |
|
||||||||||| |||||||| | |||||||| ||||| ||||| ||||| | |||||||| || | || ||||| | || ||||||||||| |||| |
|
|
| T |
13454868 |
gttccaatgataacgtggccagtccatggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaat |
13454769 |
T |
|
| Q |
158 |
ggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaa |
257 |
Q |
| |
|
|| | |||| |||| ||| ||| ||||||||| |||| | | |||| || ||||||| ||||| | ||||||||| | |||||||||||||| | || |
|
|
| T |
13454768 |
ggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaa |
13454669 |
T |
|
| Q |
258 |
aatcagacaacatgctcgagagtttgg |
284 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
13454668 |
tatcagggtacgtgctcgagagtttgg |
13454642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 298
Target Start/End: Original strand, 3417620 - 3417912
Alignment:
| Q |
6 |
atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgag |
105 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||| ||| ||||||| ||||||||||| ||||||||| |||||||| ||||| | ||||||| |
|
|
| T |
3417620 |
atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag |
3417719 |
T |
|
| Q |
106 |
aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggata |
205 |
Q |
| |
|
|| | |||||||| || | || ||||| ||||| || |||||||| |||||| | || |||||||||||| ||| ||||| |||| | || ||| |
|
|
| T |
3417720 |
aaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatg |
3417819 |
T |
|
| Q |
206 |
atattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaac |
298 |
Q |
| |
|
| || ||||||| ||| | |||||||||||||| ||||||| ||||| || |||| || |||||||||| |||| ||||| ||||||| |
|
|
| T |
3417820 |
acatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaac |
3417912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 12590266 - 12590411
Alignment:
| Q |
7 |
tttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgaga |
106 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||| |||||||| || |||| |||||||| ||||| || |||| ||||| ||||||||||||| |
|
|
| T |
12590266 |
tttatgacacattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgaga |
12590365 |
T |
|
| Q |
107 |
agttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
152 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||| || |||||||| |
|
|
| T |
12590366 |
agttgataactgatgtgcatggaattggagtggaagttggtgcaac |
12590411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 12483559 - 12483706
Alignment:
| Q |
5 |
catttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatga |
104 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||| || || |||||||||||| |||||||||||||||||||| | || || ||||| ||||||||||| |
|
|
| T |
12483559 |
catttatgactcactgtggatggaattctgttgtggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatga |
12483658 |
T |
|
| Q |
105 |
gaagttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
152 |
Q |
| |
|
||| | ||||| | |||| |||||||| ||||| ||||||||||| |
|
|
| T |
12483659 |
gaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaac |
12483706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 12540771 - 12540482
Alignment:
| Q |
6 |
atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgag |
105 |
Q |
| |
|
||||||||||||||||||| | || || | ||| ||||| ||| |||| || ||||||||||| ||||||||| |||||||| || || | ||| ||| |
|
|
| T |
12540771 |
atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag |
12540672 |
T |
|
| Q |
106 |
aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggata |
205 |
Q |
| |
|
|| | ||||||||||| | || ||||| || || || |||||||| |||||| | |||| ||||| |||||| ||| ||||| ||||| | || ||| |
|
|
| T |
12540671 |
aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg |
12540572 |
T |
|
| Q |
206 |
atattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagcta |
295 |
Q |
| |
|
|| ||||||| | ||| | |||||||||| ||||| |||||||||| || || |||| || ||| |||||| |||| ||||| |||| |
|
|
| T |
12540571 |
gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggcta |
12540482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 28385296 - 28385131
Alignment:
| Q |
130 |
attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat |
229 |
Q |
| |
|
||||| ||||| || |||| |||||||||| | |||| ||||| |||||| ||| ||||| |||| | || ||||| || ||||||| | ||| | || |
|
|
| T |
28385296 |
attggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggctatgaggaaat |
28385197 |
T |
|
| Q |
230 |
tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagcta |
295 |
Q |
| |
|
|||||||| |||| ||||||||||| || || ||||||| |||||||||||| || ||||| |||| |
|
|
| T |
28385196 |
tgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggcta |
28385131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 12641608 - 12641720
Alignment:
| Q |
40 |
gaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacaattttacaatgagaagttgataacacaggtgcatgggattggggtgg |
139 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |||| |||||||| || || ||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
12641608 |
gaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataactgttgtgcgaaggattggggtgg |
12641707 |
T |
|
| Q |
140 |
aggtcggtgcaac |
152 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
12641708 |
aggtgggtgcaac |
12641720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 12641771 - 12641870
Alignment:
| Q |
203 |
ataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc |
302 |
Q |
| |
|
||| ||| ||||| | ||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||| |||||||||| | || |||| |||||| |
|
|
| T |
12641771 |
atagtatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc |
12641870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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