View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_27 (Length: 305)
Name: NF13783_low_27
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 96 - 301
Target Start/End: Complemental strand, 12104236 - 12104030
Alignment:
| Q |
96 |
gacttgtacaattgattttagccttaaatctatcgtaaaatccatttttacataaattattttacat-caactcacttttatctcaaatcaattttatag |
194 |
Q |
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| T |
12104236 |
gacttgtacaattgattttagccttaaatctatcgtaaaatccatttttacataaattattttatattcaactcacttttatctcaaatcaattttatag |
12104137 |
T |
|
| Q |
195 |
aatcaatccggttaaaaccaatccactcaaacataaatggctttgcatttctgcgttttttgtgcggtctgatcatgggattgtagaggctttgagctgc |
294 |
Q |
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| T |
12104136 |
aatcaatcctgttaaaaccaatccactcaaacataaatggctttgcatttctgcgttttttgtgcggtctgatcatgggattgtagaggctttgagctgc |
12104037 |
T |
|
| Q |
295 |
aactctg |
301 |
Q |
| |
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||||||| |
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| T |
12104036 |
aactctg |
12104030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 12104325 - 12104296
Alignment:
| Q |
9 |
ataatacttaagttagaatttataactttt |
38 |
Q |
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| T |
12104325 |
ataatacttaagttagaatttataactttt |
12104296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 38453384 - 38453491
Alignment:
| Q |
96 |
gacttgtacaattgattttagccttaaatctatcgtaaaatccatttttacataaattattt--tacatcaactcacttttatctcaaatcaattttata |
193 |
Q |
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| T |
38453384 |
gacttctacaattgattttagccttaaattcattgataaatccacttttacataaatacattaaaacat-aaatcacttttatctaaaatcaattttaca |
38453482 |
T |
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| Q |
194 |
gaatcaatc |
202 |
Q |
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||||||||| |
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| T |
38453483 |
gaatcaatc |
38453491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 7206322 - 7206372
Alignment:
| Q |
102 |
tacaattgattttagccttaaatctatcgtaaaatccatttttacataaat |
152 |
Q |
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||||||||||||||||||||||| ||| || ||||| | |||||||||||| |
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| T |
7206322 |
tacaattgattttagccttaaatttattgttaaatctagttttacataaat |
7206372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 8849569 - 8849520
Alignment:
| Q |
103 |
acaattgattttagccttaaatctatcgtaaaatccatttttacataaat |
152 |
Q |
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|||||||||||| |||||||| ||| || |||||||||||||||||||| |
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|
| T |
8849569 |
acaattgattttgcccttaaatttattgttaaatccatttttacataaat |
8849520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 36307005 - 36307055
Alignment:
| Q |
102 |
tacaattgattttagccttaaatctatcgtaaaatccatttttacataaat |
152 |
Q |
| |
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||||||||||||||||||||||| ||| || ||||||| ||||| |||||| |
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| T |
36307005 |
tacaattgattttagccttaaatttattgttaaatccacttttatataaat |
36307055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 3887493 - 3887443
Alignment:
| Q |
102 |
tacaattgattttagccttaaatctatcgtaaaatccatttttacataaat |
152 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| |||||||||||| |
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| T |
3887493 |
tacaattgattttagccttaaatttattattaaatccacttttacataaat |
3887443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 11038286 - 11038342
Alignment:
| Q |
145 |
acataaattattttacatcaactcacttttatctcaaatcaattttatagaatcaat |
201 |
Q |
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|||||| ||||||||| |||||||||||||| | |||||||||||| |||||||| |
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|
| T |
11038286 |
acataagttattttacttcaactcacttttagttaaaatcaattttaaggaatcaat |
11038342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 48089675 - 48089619
Alignment:
| Q |
146 |
cataaattattttacat-caactcacttttatctcaaatcaattttatagaatcaat |
201 |
Q |
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||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||| |
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| T |
48089675 |
cataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaat |
48089619 |
T |
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