View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_low_29 (Length: 296)
Name: NF13783_low_29
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 39454625 - 39454905
Alignment:
| Q |
1 |
cctggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
39454625 |
cctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtctccgaataactgttttagtcctcaaatttccac |
39454724 |
T |
|
| Q |
101 |
acgccactgaaaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatcc |
200 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454725 |
acgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaaccttccagaatgctctcttcccccaaacactaatcc |
39454824 |
T |
|
| Q |
201 |
agtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagc |
281 |
Q |
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| T |
39454825 |
agtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagc |
39454905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 39472058 - 39472293
Alignment:
| Q |
37 |
gcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccacacgccactgaaaccgatgtatacactaaatctcttc |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||| ||| ||||||||||| ||||||||||| |||| |
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| T |
39472058 |
gcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttc |
39472157 |
T |
|
| Q |
137 |
caatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaa |
236 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||| || | |||| ||| | || | ||| ||||||||||| |
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| T |
39472158 |
ctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactgcgctcctcgaagctcagaa |
39472257 |
T |
|
| Q |
237 |
accaaacgtcaaacaagccgtatctaacctcattac |
272 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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| T |
39472258 |
accaaacgtcaaacaagtagtatctaacctcattac |
39472293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 39450986 - 39451263
Alignment:
| Q |
1 |
cctggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccac |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| || |||| |
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| T |
39450986 |
cctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgtctccgagtaactgttttagttatcaaattcccac |
39451085 |
T |
|
| Q |
101 |
acgccactgaaaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatcc |
200 |
Q |
| |
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| | |||| ||||| |||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
39451086 |
atatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatcc |
39451185 |
T |
|
| Q |
201 |
agtttcc---tccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactgg |
275 |
Q |
| |
|
|| || | |||||| | |||| ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||| |
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| T |
39451186 |
aggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactgg |
39451263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 39486445 - 39486723
Alignment:
| Q |
1 |
cctggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccac |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| | || || ||||||||||||||||||||||||||||| ||||| | || ||| |||| || |||| |
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| T |
39486445 |
cctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataaccatcttggtcatcaaattcccac |
39486544 |
T |
|
| Q |
101 |
acgccactga-aac-----cgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacac |
194 |
Q |
| |
|
|| |||| || || |||||| ||||| ||||| ||||| || |||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
39486545 |
acaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacac |
39486644 |
T |
|
| Q |
195 |
taatcca-gtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
273 |
Q |
| |
|
| ||| |||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
39486645 |
cgaaccacgttttgt-catgaacgctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactact |
39486723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 39475502 - 39475767
Alignment:
| Q |
11 |
gccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccacacgccactga |
110 |
Q |
| |
|
||||| || ||||||| |||||| | | ||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| || |||||| || || |
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|
| T |
39475502 |
gccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacataacaga |
39475601 |
T |
|
| Q |
111 |
aaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccag---tttcc |
207 |
Q |
| |
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|| ||||| |||||||||| ||||| ||||| || || ||| ||||||||||||||||||| ||||||||||||||||| |||||| | || |
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| T |
39475602 |
aaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctct |
39475701 |
T |
|
| Q |
208 |
tccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
273 |
Q |
| |
|
|||||| | |||| ||| |||||||||||||||||||| |||||||| || || ||||||| |||| |
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|
| T |
39475702 |
tccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactact |
39475767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 39464701 - 39464451
Alignment:
| Q |
17 |
tagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccacacgccactgaaaccga |
116 |
Q |
| |
|
||||||| |||||||| | ||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||| | ||||| || | ||| |||| |
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|
| T |
39464701 |
tagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccga |
39464602 |
T |
|
| Q |
117 |
tgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtcc |
216 |
Q |
| |
|
||| ||||||||||| |||| || || ||||| || ||||||||||||||||| |||||||||| || | || |||||| |||| | ||| | |
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| T |
39464601 |
tgtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgctatgaac |
39464502 |
T |
|
| Q |
217 |
gctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctc |
267 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39464501 |
gctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc |
39464451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 39458477 - 39458210
Alignment:
| Q |
1 |
cctggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccac |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || | || || ||||||||||||||||||||||||||||| |||||| | || ||| | || ||||||| |
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|
| T |
39458477 |
cctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataactatcttggtcatgaaatttccac |
39458378 |
T |
|
| Q |
101 |
acgccactgaaaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatcc |
200 |
Q |
| |
|
|| | || |||| ||||| ||||||||||| ||| | ||| |||||| || ||| || ||||||||||||| ||||||||||||||| | ||| |
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|
| T |
39458377 |
acacaacagaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaactccaatat |
39458278 |
T |
|
| Q |
201 |
agtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctca |
268 |
Q |
| |
|
| |||| |||| | || ||| ||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
39458277 |
aacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctca |
39458210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39480359 - 39480441
Alignment:
| Q |
1 |
cctggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgtttt |
83 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39480359 |
cctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgtttt |
39480441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 39460246 - 39460508
Alignment:
| Q |
11 |
gccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccacacgccactga |
110 |
Q |
| |
|
||||| ||| ||||||||||||| |||| || ||||||| |||||||||||| || ||||| || ||||| ||||| | || | ||| || | | || |
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|
| T |
39460246 |
gccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcctccgaattactgtcctagtcatgaaactcccatacacatcaga |
39460345 |
T |
|
| Q |
111 |
aaccgatgtatacactaaatctcttccaatctccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctcc |
210 |
Q |
| |
|
| ||||||| |||||||||| ||||| | || ||||| ||| ||||||||||||||||||| |||||||||||||||| | ||| |||| |
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|
| T |
39460346 |
atccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccaga |
39460445 |
T |
|
| Q |
211 |
atgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattact |
273 |
Q |
| |
|
||| ||| ||| |||||||||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
39460446 |
atgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactact |
39460508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 275
Target Start/End: Complemental strand, 39470898 - 39470666
Alignment:
| Q |
43 |
cttctaatcaaccgtgataaccgtctccgcataactgttttagtcctcaactttccacacgccactgaaaccgatgtatacactaaatctcttccaatct |
142 |
Q |
| |
|
||||||||||||| ||||||||| ||| | |||||||| |||||| | || || |||||| | | ||| | ||||| ||| ||||||| |||| |||| |
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|
| T |
39470898 |
cttctaatcaaccatgataaccgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatct |
39470799 |
T |
|
| Q |
143 |
ccgattcactccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaa |
242 |
Q |
| |
|
| ||||| |||| ||||||||||||||||| ||| ||| ||||| | || |||||| ||| ||| ||||| ||| |||||||| ||| |||| |
|
|
| T |
39470798 |
ctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacgctctcctcgaagctcataaagcaaa |
39470699 |
T |
|
| Q |
243 |
cgtcaaacaagccgtatctaacctcattactgg |
275 |
Q |
| |
|
|||||||||||| | || ||||||| |||||| |
|
|
| T |
39470698 |
cgtcaaacaagctatctccaacctcactactgg |
39470666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 43312693 - 43312626
Alignment:
| Q |
4 |
ggtgttggccatttagtttccacccttgagatcgcgaaacttctaatcaaccgtgataaccgtctccg |
71 |
Q |
| |
|
||||| || |||||||| |||||||||||| | || || ||||| ||||||||||||||||||||||| |
|
|
| T |
43312693 |
ggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccg |
43312626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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