View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_3 (Length: 605)

Name: NF13783_low_3
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_3
NF13783_low_3
[»] chr3 (2 HSPs)
chr3 (4-267)||(30742361-30742623)
chr3 (369-413)||(30742720-30742764)
[»] chr4 (4 HSPs)
chr4 (4-267)||(30142086-30142348)
chr4 (4-249)||(19800295-19800539)
chr4 (369-412)||(19800154-19800197)
chr4 (369-412)||(30141946-30141989)
[»] chr5 (2 HSPs)
chr5 (4-249)||(22303082-22303326)
chr5 (369-412)||(22302940-22302983)
[»] chr2 (2 HSPs)
chr2 (369-472)||(22806344-22806447)
chr2 (222-267)||(22806202-22806247)
[»] chr6 (2 HSPs)
chr6 (517-587)||(20212550-20212620)
chr6 (517-587)||(22106573-22106643)
[»] chr8 (2 HSPs)
chr8 (369-412)||(24030701-24030744)
chr8 (217-255)||(24030853-24030891)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 30742361 - 30742623
Alignment:
Q  4 ttttatcttacatgggaaaaacgggccttaacaagtatcgggccgaaaaacaaatgttgccttgaaattaattatttaaaataacgtctggaacaaaatg 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30742361 ttttatcttacatgggaaaaacgggcctta-caagtatcgggccgaaaaacaaatgttgcctcgaaattaattatttaaaataacgtctggaacaaaatg 30742459  T
Q  104 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30742460 cgattatttgactcctttgcgctcggaactgggttttggcctcaacatgaaagttgtagcatttgctcttagctttctaacacatggtcgcgggcctcaa 30742559  T
Q  204 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 267  Q
    || |||||| ||  |||||||||| |||| |||||||||||||||| ||||| |||||||||||    
T  30742560 actgataaatgcaactccagttataccctacgcaatgaaaggtgtcaaattattgtttattcag 30742623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 30742720 - 30742764
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30742720 catagcataagatagaagaaagtacattaaaaatgcactgatcaa 30742764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 30142348 - 30142086
Alignment:
Q  4 ttttatcttacatgggaaaaacgggccttaacaagtatcgggccgaaaaacaaatgttgccttgaaattaattatttaaaataacgtctggaacaaaatg 103  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||| |    
T  30142348 ttttatattacatgggaaaaacgggcctta-caagtatcgggccgaaaaacaaatgttgtctcaaaattaattatttaaaataatgtctggaacaaaacg 30142250  T
Q  104 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 203  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30142249 cgattatttgactcctttgtgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggtcgcgggcctcaa 30142150  T
Q  204 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 267  Q
    |||||||||| | |||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  30142149 accgataaacacagctccagttatgccctgcacaatgaaagatgtcaaattactgtttattcag 30142086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 19800539 - 19800295
Alignment:
Q  4 ttttatcttacatgggaaaaacgggccttaacaagtatcgggccgaaaaacaaatgttgccttgaaattaattatttaaaataacgtctggaacaaaatg 103  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||      
T  19800539 ttttatattacatgggaaaaacgggcctta-cgagtatcgggccgaaaaacaaatgttgtctcgaaattaattatttaaaataacgtctggaacaaaaca 19800441  T
Q  104 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 203  Q
    |||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||||||    
T  19800440 cgattacttgactcctttgcactccgaactgggttctgtcctcaacatgaaagttctagaattttctcttagctttccagcgcatggtcgcgggcctcaa 19800341  T
Q  204 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 249  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||    
T  19800340 accgataaacggagctccagttatgccctgcgtaatgaaaggtgtc 19800295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 19800197 - 19800154
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatca 412  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  19800197 catagcataagatggaagaaagtacattaaaaatgcactgatca 19800154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 30141989 - 30141946
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatca 412  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  30141989 cataacataagatagaagaaagtacattaaaaatgcactgatca 30141946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 22303326 - 22303082
Alignment:
Q  4 ttttatcttacatgggaaaaacgggccttaacaagtatcgggccgaaaaacaaatgttgccttgaaattaattatttaaaataacgtctggaacaaaatg 103  Q
    |||||| ||||||||||| ||||||| ||  |||||||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||| |    
T  22303326 ttttatattacatgggaacaacgggctttg-caagtatcgggccgaaaaacaaatgttgtctcaaaattaattattcaaaataacgtctggaacaaaacg 22303228  T
Q  104 cgattatttgactcctttgcgctcggaactgggttctggcctcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaa 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||    
T  22303227 cgattatttgactcctttgcgctcggaactgggttctgtcctcaacatgaaagttgtagcattttctcttagctttccaacgcatggttgtgggcctcaa 22303128  T
Q  204 accgataaacgctgctccagttatgccctgcgcaatgaaaggtgtc 249  Q
    | |||||||||| |||||||||||||||||||||||||||||||||    
T  22303127 aacgataaacgcagctccagttatgccctgcgcaatgaaaggtgtc 22303082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 22302983 - 22302940
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22302983 catagcataagatagaagaaagtacattaaaaatgcactgatca 22302940  T

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Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 369 - 472
Target Start/End: Original strand, 22806344 - 22806447
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacacttaagcttttgctctccgagcaaatctcaagattaaagactca 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22806344 catagcataagatagaagaaagtacattaaaaatgcactgatcaaattcccccacacttaagcttttgctcttcgagcaaatctcaagattaaagactca 22806443  T
Q  469 aggt 472  Q
    ||||    
T  22806444 aggt 22806447  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 22806202 - 22806247
Alignment:
Q  222 agttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 267  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  22806202 agttatggcctgcgcaatgaaaggtgtccaattactgtttattcag 22806247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 517 - 587
Target Start/End: Complemental strand, 20212620 - 20212550
Alignment:
Q  517 ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcct 587  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20212620 ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcct 20212550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 517 - 587
Target Start/End: Complemental strand, 22106643 - 22106573
Alignment:
Q  517 ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcct 587  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22106643 ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcct 22106573  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 24030744 - 24030701
Alignment:
Q  369 catagcataagatagaagaaagtacattaaaaatgcactgatca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24030744 catagcataagatagaagaaagtacattaaaaatgcactgatca 24030701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 24030891 - 24030853
Alignment:
Q  217 gctccagttatgccctgcgcaatgaaaggtgtccaatta 255  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  24030891 gctcgagttatgccctgcgcaatgaaaggtgtcaaatta 24030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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