View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_30 (Length: 287)
Name: NF13783_low_30
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30037417 - 30037323
Alignment:
| Q |
1 |
cgtgaacttaactcagttggtaggattaatatcctcgtgagcataaccttaagacaatctataatatatgtaaggttttaggttcaaaatctggt |
95 |
Q |
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| T |
30037417 |
cgtgaacttaacttagttggtaggatcaatgtcttcgtgagcataacgttaaaacaatgcataatatatgcaaggttttaggtttaaaatctggt |
30037323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 30153041 - 30152991
Alignment:
| Q |
118 |
aaaccaatgcataatatatataaaggtctgggttcaaactctagccatcac |
168 |
Q |
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| T |
30153041 |
aaaccaatgcataatatatgcaaaggtctgagttcaaactctagccatcac |
30152991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30037285 - 30037245
Alignment:
| Q |
128 |
ataatatatataaaggtctgggttcaaactctagccatcac |
168 |
Q |
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| T |
30037285 |
ataatatatgcaaaggtctgggttcaaactctagccatcac |
30037245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 30037174 - 30037145
Alignment:
| Q |
239 |
atgtaagtattttcgagcaaaccttcgcac |
268 |
Q |
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| T |
30037174 |
atgtaagtattttcgagcaaaccttcgcac |
30037145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 30152909 - 30152880
Alignment:
| Q |
239 |
atgtaagtattttcgagcaaaccttcgcac |
268 |
Q |
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| T |
30152909 |
atgtaagtattttcgagcaaaccttcgcac |
30152880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27279442 - 27279406
Alignment:
| Q |
52 |
agacaatctataatatatgtaaggttttaggttcaaa |
88 |
Q |
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| T |
27279442 |
agacaatgtataatatatgtaaggtttgaggttcaaa |
27279406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 4806834 - 4806798
Alignment:
| Q |
52 |
agacaatctataatatatgtaaggttttaggttcaaa |
88 |
Q |
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| T |
4806834 |
agacaatgtataatatatgtaaggtttgaggttcaaa |
4806798 |
T |
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