View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_31 (Length: 285)

Name: NF13783_low_31
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_31
NF13783_low_31
[»] chr7 (3 HSPs)
chr7 (15-285)||(7969259-7969529)
chr7 (72-284)||(37577632-37577842)
chr7 (179-248)||(32895222-32895287)
[»] chr5 (9 HSPs)
chr5 (74-281)||(32651194-32651398)
chr5 (74-282)||(32768424-32768629)
chr5 (74-160)||(25477838-25477924)
chr5 (73-160)||(32710668-32710755)
chr5 (74-160)||(32557359-32557445)
chr5 (145-248)||(32740594-32740694)
chr5 (115-284)||(25469920-25470086)
chr5 (93-172)||(32763443-32763522)
chr5 (236-284)||(28475450-28475498)
[»] chr1 (1 HSPs)
chr1 (73-151)||(17583916-17583994)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 7969529 - 7969259
Alignment:
Q  15 caatagtcaatgtgaaggagaagattttcgaaaagaataaagattaccaagtacacttgcaacgtctgatctttgccagtaagcaattagatgacagcct 114  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7969529 caataggcaatgtgaaggagaagattttcgacaagaataaagattaccaagtacacgtgcaacgtctgatctttgccagtaagcaattagatgacagcct 7969430  T
Q  115 gaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7969429 gaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcgccatcatcaccaattact 7969330  T
Q  215 aaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatct 285  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7969329 aaatccaaaagcaggcaatcatccacctcatcatctgccactgtcggcaacccttgtcatgaagacaatct 7969259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 284
Target Start/End: Original strand, 37577632 - 37577842
Alignment:
Q  72 tgcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcct 171  Q
    |||||||||||||||||||| ||||| || ||||| | ||||||||| ||||||||| | |||||||||||| |||||||||| |  |||||  |||| |    
T  37577632 tgcaacgtctgatctttgccggtaaggaactagataatagcctgacccttgccaattaccacatccaagagaagtcaaccctcaaattcgtcctccgcat 37577731  T
Q  172 catcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgt 271  Q
    ||| || || ||||||||| | |||| |||  | ||||||| || ||||||||||| |||| | ||||||||||  |||||||| || ||  ||||||||    
T  37577732 catgggggattagatgacctccgcacaatc--ccccgattaatacatccaagagcatgcaaccgtccacctcattgtctgccgccgttggtgacccttgt 37577829  T
Q  272 catgaagacaatc 284  Q
    |||||||||||||    
T  37577830 catgaagacaatc 37577842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 32895222 - 32895287
Alignment:
Q  179 gactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcat 248  Q
    |||||||||||||||||    |||||||| ||||||| |||||||||||||||| ||||||||| |||||    
T  32895222 gactagatgaccactgcg---tcatcacc-attactacatccaagagcaggcaaccatccaccttatcat 32895287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 32651398 - 32651194
Alignment:
Q  74 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 173  Q
    |||||| ||||||||||  |||| ||| |||| ||| ||| || | ||||| ||| || ||||||||| | ||||||| | |||||| |   |||  |||    
T  32651398 caacgtttgatctttgctggtaaacaactagaggacggccggatccttgccgattacatcatccaagataagtcaaccattcacctcattctccgtgtca 32651299  T
Q  174 tcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtca 273  Q
    |||| |||||||||||||||||||||||    |||||||||| ||||||||| || ||| | ||||||||||||||||| ||  ||||||||| || |||    
T  32651298 tcggggactagatgaccactgcaccatcg---ccgattactatatccaagagaagtcaaccgtccacctcatcatctgctgccatcggcaaccgttatca 32651202  T
Q  274 tgaagaca 281  Q
     |||||||    
T  32651201 cgaagaca 32651194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 282
Target Start/End: Original strand, 32768424 - 32768629
Alignment:
Q  74 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctca 173  Q
    |||||| |||| |||||| ||| ||||  |||||||| |  |||| |||||||||||||||||||||||| ||||| ||| ||| |||||| |||||| |    
T  32768424 caacgtttgatatttgccggtaggcaacgagatgacaacgagacccttgccaattgcaacatccaagagaagtcaatcctgcacgtcgtcatccgcctta 32768523  T
Q  174 tcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtca 273  Q
      || |||||||||| |||  || ||||||| | |||||||   | ||||||||||||  | ||||||||||| | |||||| |||||  |||||| |||    
T  32768524 ctggggactagatgatcac--ca-catcatcgctgattactgttttcaagagcaggcagccgtccacctcatcgtttgccgccgtcggggacccttatca 32768620  T
Q  274 tgaagacaa 282  Q
    |||||||||    
T  32768621 tgaagacaa 32768629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 25477838 - 25477924
Alignment:
Q  74 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 160  Q
    ||||||||||| ||| || |||||||| |||| ||| ||| |||||||||||||| |||||||||||||| ||||||| ||||||||    
T  25477838 caacgtctgatattttccggtaagcaactagacgactgccagaccattgccaattacaacatccaagagaagtcaaccatccacctc 25477924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 32710668 - 32710755
Alignment:
Q  73 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 160  Q
    |||| |||||||||||||||||||| || ||| |||| | | |||| ||||||||| |||||||||||||| |||||||||| |||||    
T  32710668 gcaatgtctgatctttgccagtaaggaactagctgactgtcagacccttgccaattacaacatccaagagaagtcaaccctcaacctc 32710755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 32557445 - 32557359
Alignment:
Q  74 caacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctc 160  Q
    ||||||||||| ||||||| ||||| | ||||||||||||  ||| ||||| ||| |||||||||||||| | ||||||||||||||    
T  32557445 caacgtctgatgtttgccaataagctactagatgacagccatacccttgcctattacaacatccaagagaaggcaaccctccacctc 32557359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 32740594 - 32740694
Alignment:
Q  145 gtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctca 244  Q
    |||||||||||||||||||  ||||||| | ||||||||||||||||   || || ||||||||||||||| |||||||||  ||||||  ||||||| |    
T  32740594 gtcaaccctccacctcgtcctccgcctccttggagactagatgacca---caacaccatcaccgattactacatccaagagttggcaattgtccacctta 32740690  T
Q  245 tcat 248  Q
    ||||    
T  32740691 tcat 32740694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 284
Target Start/End: Original strand, 25469920 - 25470086
Alignment:
Q  115 gaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattact 214  Q
    |||||||||||||||||||||| |||||| |||| || ||  |||||||   |||||||| || ||||||| ||| ||   ||||||      |||||||    
T  25469920 gaccattgccaattgcaacatcgaagagaagtcagccatcttcctcgtctttcgcctcatgggcgactagacgacaaccaaaccatcggt---gattact 25470016  T
Q  215 aaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatc 284  Q
    | |||||||||||||||| |||| ||||||||||| || ||  ||||| |||  | ||||||||||||||    
T  25470017 acatccaagagcaggcaaccatcaacctcatcatccgctgccatcggcgacctgtatcatgaagacaatc 25470086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 32763443 - 32763522
Alignment:
Q  93 gtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaaccctccacctcgtcagccgcctc 172  Q
    ||||||| ||||| |||| ||| ||| ||||||||| ||||||||||||||  |||||| |||||||| ||| |||||||    
T  32763443 gtaagcagttagaggacaaccttacccttgccaattacaacatccaagagaattcaaccatccacctcctcatccgcctc 32763522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 28475450 - 28475498
Alignment:
Q  236 tccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatc 284  Q
    ||||||||||| ||  |||||||||||||||||| || |||||||||||    
T  28475450 tccacctcatcgtccaccgctgtcggcaacccttatcgtgaagacaatc 28475498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 17583916 - 17583994
Alignment:
Q  73 gcaacgtctgatctttgccagtaagcaattagatgacagcctgaccattgccaattgcaacatccaagagaggtcaacc 151  Q
    ||||||||||||||||| | |||||||| |||| |||| || |||| ||||| ||| |||||||||||||| |||||||    
T  17583916 gcaacgtctgatctttgacggtaagcaactagaggacaaccggacccttgccgattacaacatccaagagaagtcaacc 17583994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University