View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_33 (Length: 269)
Name: NF13783_low_33
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 2272043 - 2271799
Alignment:
| Q |
19 |
cgagaacaccaggaagcagccctcatcccataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272043 |
cgagaacaccaggaagcagccctcatcccataaaatcaaaccagaaacgcaggaagccagtaaatacaaaagcattacataccacattatttttgcaccg |
2271944 |
T |
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| Q |
119 |
attctaaacttgagataataagtcattacttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271943 |
attctaaacttgagataataagtcattacttaccacattacaccaacattgtaactactttaattatgaacattttagttggtgtaaaatcccctctgta |
2271844 |
T |
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| Q |
219 |
gaagaacaatattcatcttaaatttcagcattgaattcatctcac |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2271843 |
gaagaacaatattcatcttaaatttcagcattgaattcatttcac |
2271799 |
T |
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