View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_36 (Length: 243)

Name: NF13783_low_36
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_36
NF13783_low_36
[»] chr6 (1 HSPs)
chr6 (90-191)||(21264342-21264443)
[»] chr8 (1 HSPs)
chr8 (97-157)||(10113039-10113099)
[»] chr3 (1 HSPs)
chr3 (98-176)||(9198039-9198117)
[»] chr7 (3 HSPs)
chr7 (96-191)||(19087385-19087483)
chr7 (121-175)||(21261914-21261968)
chr7 (131-179)||(44235372-44235420)
[»] chr1 (1 HSPs)
chr1 (120-177)||(1714052-1714109)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 21264443 - 21264342
Alignment:
Q  90 gatagtgaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 189  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264443 gatagtgaataagttagttgattgattctctagtgtttgacaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 21264344  T
Q  190 at 191  Q
    ||    
T  21264343 at 21264342  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 10113039 - 10113099
Alignment:
Q  97 aataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataa 157  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||  ||||||||||    
T  10113039 aataagttagttgattgattctatagtatttgataaaattagtggttgaactagtttataa 10113099  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 9198039 - 9198117
Alignment:
Q  98 ataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaa 176  Q
    ||||||||||||||||| ||| |||| ||||| ||||||| | |||||  |||||| ||||||| ||||||| ||||||    
T  9198039 ataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaaaa 9198117  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 19087483 - 19087385
Alignment:
Q  96 gaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa---tgcatttaattaat 191  Q
    ||||||||||  ||||||| | |||||||||||  |||||||| ||||||  || |||| |||||| ||||||| |||||||   ||||||||||||||    
T  19087483 gaataagttaaatgattgaatttatagtatttgataaaattaacggttgaattaatttaaaaatatgaaatgacataaaaaaatgtgcatttaattaat 19087385  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 21261968 - 21261914
Alignment:
Q  121 agtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaa 175  Q
    ||||||||| ||||||| | ||||| |||| | ||||||||||||||||||||||    
T  21261968 agtatttggtaaaattagttgttgaagtagctgataaatataaaatgacgtaaaa 21261914  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 44235372 - 44235420
Alignment:
Q  131 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg 179  Q
    |||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  44235372 aaaattagcggttgaagtagtttataaatatgaaatgacataaaaaatg 44235420  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 1714052 - 1714109
Alignment:
Q  120 tagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa 177  Q
    |||| ||||| ||||||||  ||||| ||||||||||||||| ||||||| |||||||    
T  1714052 tagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaaaaa 1714109  T

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