View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_low_38 (Length: 234)
Name: NF13783_low_38
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_38 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 6820269 - 6820465
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6820269 |
agacgcaagtaaaacggtggtgcacatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatccagaactt |
6820366 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
6820367 |
tgaccagttaggtgtagtgttgggtagaaaaaggttaagtgccttgttattaggaatattatattttttatgtaaaatttactattttagaaattcaaa |
6820465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 44669655 - 44669845
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
44669655 |
agacgcaagtaaaacggtggcgcacatttggaggcttgatatattccgacag--tggtattagctttgatgagaaaacttttcacaagcatccagaactt |
44669752 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtag-aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaa |
207 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||| ||| | ||| |||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
44669753 |
tgaccagctaggtgtagtcttgggtagaaaaaaggccaagagccttactattaggaataatatatttttgatgtaaaatttactattttggaa |
44669845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 3896582 - 3896393
Alignment:
| Q |
24 |
gtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagc |
123 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3896582 |
gtaaaatggtggcgcacatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatccaaaactttgaccagc |
3896485 |
T |
|
| Q |
124 |
taggtgtactgttgggtaga-aaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
|||||||| | ||||||||| ||||||| ||| | |||| |||||||||| |||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
3896484 |
taggtgtagtcttgggtagaaaaaaggccaagagccttgctattaggaataatatatttttgatgaaaaatttactattttggaaattcaaa |
3896393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 5536364 - 5536206
Alignment:
| Q |
54 |
atatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgtactgttgggta-gaaaaaggcta |
152 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| | |||||| |||||||||| | ||| | | |||||||| | |
|
|
| T |
5536364 |
atatattccgacac--tggtattagccttgttgaaaaaacttttcacaagcatccacaactttgattggctaggtgtagtcttgagaaggaaaaaggtca |
5536267 |
T |
|
| Q |
153 |
agtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
|||||||||| |||||| ||| |||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
5536266 |
agtgtcttgttattagggataatatatt-tttatgtaaaattcaccattttggaaattcaaa |
5536206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 28384823 - 28385022
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
28384823 |
agacgcaagtaaaacggttgcgcacatttggaggcttggtatattccgacac--tggtattagccttgttgagaaaacttttcacaagcaaccagaattt |
28384920 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtagaaaaag--gctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
||||||| |||||||| | ||||||||||||| | ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28384921 |
tgaccagttaggtgtagtcttgggtagaaaaaaaagtcaagtgtcttgttattaggaataatatatttttgatgtaaaatttactattttggaaattcaa |
28385020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 26262512 - 26262343
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
26262512 |
gtggtgcacatttggaggcttgatatattccgacac--tagtattagccttgttgagaaaaattttcacaagcatccggaactttgaccagttaggtgta |
26262415 |
T |
|
| Q |
132 |
ctgttgggtagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactatttt |
203 |
Q |
| |
|
| |||||||||||||||| || ||||||| ||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
26262414 |
gtcttgggtagaaaaaggccaaatgtcttgatattaggaatattatacttttgttgtaaaatttactatttt |
26262343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 36018677 - 36018857
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| | |||||||| ||||||| |||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
36018677 |
gtggtgcacatttggaggcttgatatattctaacac--tagtattagccttgttgaaaaaacttttcacaagcatccgaaactttgaccagctagatgta |
36018774 |
T |
|
| Q |
132 |
ctgttgggtagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
| |||||||||||||||| || ||||||| ||||||||||||||| | ||| |||||| |||||||||||||||||||||| |
|
|
| T |
36018775 |
gtcttgggtagaaaaaggccaaatgtcttgatattaggaatattatacttttgttgtaaactttactattttggaaattcaaa |
36018857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 12528016 - 12527836
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
12528016 |
gtggtgcatatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaactttttacaagcatccagaactttgaccagctaggtgta |
12527919 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
||||||| ||||||||| |||| |||||| |||||| ||| || ||| || |||||||||| |||||||| |||||||||| |
|
|
| T |
12527918 |
gccttgggtaggaaaaaggccaagtatcttgttattagggataatagatt-tttatgtaaaattcactattttagaaattcaaa |
12527836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 16422429 - 16422606
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
16422429 |
gtggtgcacatttggaggctcgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatctagaactttg---agctaggtgta |
16422523 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattata-ttattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
| || |||| ||||||||| ||||||||||| |||||| |||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
16422524 |
gtcttaggtaggaaaaaggc-aagtgtcttgttattagggatattatatttttttatgtaaaatttactattttggaaattcaa |
16422606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 12502382 - 12502202
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||| |||||||||| || |||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
12502382 |
gtggtgcatatttggaggcttgatatattctgacac--tggtattagccttattgagaaaactttttacaatcatccagaactttgaccagctaggtgta |
12502285 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
| ||||||| ||||||||| |||| |||||| |||||| | | || ||| || |||||||||| |||||||| |||||||||| |
|
|
| T |
12502284 |
gtcttgggtaggaaaaaggccaagtatcttgttattagggacaatagatt-tttatgtaaaattcactattttagaaattcaaa |
12502202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 16484736 - 16484861
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| |||||| ||| |||||||||| ||| |||||||||||||| ||||||||| | || |
|
|
| T |
16484736 |
agacgcaagtaaagcggtggtgcacatttggaggcttgataaattccg--acagtggtattagccttgatgagaaaacttttcgcaagcatccgaaacta |
16484833 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtaga |
143 |
Q |
| |
|
|| |||||||||| || | ||||||||| |
|
|
| T |
16484834 |
tggccagctaggtttattcttgggtaga |
16484861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 21267238 - 21267134
Alignment:
| Q |
21 |
caagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgacc |
120 |
Q |
| |
|
||||| |||| |||||||||||||||||| || ||| ||| ||||| | ||||||| ||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
21267238 |
caagtgaaacagtggtgcacatttggaggcttactattttctgacac--tagtattagtcttgttgagaaaacttttcacaagcatccacaactatgacc |
21267141 |
T |
|
| Q |
121 |
agctagg |
127 |
Q |
| |
|
| ||||| |
|
|
| T |
21267140 |
aactagg |
21267134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 48185953 - 48185849
Alignment:
| Q |
21 |
caagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgacc |
120 |
Q |
| |
|
||||| |||| ||||||||||||||||| || ||| ||| | ||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
48185953 |
caagtgaaacagtggtgcacatttggagtcttactattttctg--acactggtattagtcttgttaagaaaacttttcacaagcatccaccgctatgacc |
48185856 |
T |
|
| Q |
121 |
agctagg |
127 |
Q |
| |
|
||||||| |
|
|
| T |
48185855 |
agctagg |
48185849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 33941 - 33744
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33941 |
agacgcaagtaaaacggtggcgcatattcggaggcttgatatattccgacac--tggtatcagccttgttgagaaaacttttcacaagcatccagaactt |
33844 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtag-aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
|||||||||||||||| | || ||||| ||||| || ||| | |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33843 |
tgaccagctaggtgtagtcttaggtagaaaaaaagccaagagccttgctattaggaatagtatatttttgatgtaaaatttactattttggaaattcaaa |
33744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 1312211 - 1312410
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1312211 |
agacacaagtaaaatggtggcacacatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatctagaactt |
1312308 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtag---aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattca |
212 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||| ||| | |||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1312309 |
tgaccagctaggtgtagtcttgggtagaaaaaaaaggccaagagccttgctattaggaataatatatttttgatgtaaaatttactattttggaaattca |
1312408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 19933519 - 19933696
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||| || |||||||| |||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
19933519 |
gtggtgaacttttggaggcttgatatattccaacac--tggtattagccttgttgagaaaaattttcacaagcatccagaaccttgaccagttaggtgta |
19933616 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaatt |
210 |
Q |
| |
|
| ||||||| ||||||||| || |||||||| |||||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
19933617 |
gtcttgggtaggaaaaaggccaattgtcttgttattagggatattatattttttatgtaaaatttactattttggaaatt |
19933696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 11034255 - 11034130
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
11034255 |
gtggtgcatatttggaggcttgatatattccgacac--tggtattagccttgttgagaaa-cttttcacaagtatccagaactttgaccagttaggtgta |
11034159 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtct |
159 |
Q |
| |
|
| ||||||| ||||||||| |||||||| |
|
|
| T |
11034158 |
gtcttgggtaggaaaaaggccaagtgtct |
11034130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 18902733 - 18902913
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| | |||||||| |||||||| |
|
|
| T |
18902733 |
gtggtgcacatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaactttccacaagcatccagaaccttgaccagttaggtgta |
18902830 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||| |||| | |||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
18902831 |
gtcttgggtaggaaaaaggccaagtgtcttgttattaaggatattatattttttatgtaaaatttactattttggaaattcaa |
18902913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 18154004 - 18154186
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18154004 |
gtggtgcatatttggaggcttgatatattccgacac--tggtattagccttgttgacaaaacttttcacaagcatccagaactttgaccagctaggtgta |
18154101 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattata-ttattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||| |||||| ||| |||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
18154102 |
gtcttgggtaggaaaaaggccaagtgtcttgttattagggataatatatttttttatgtaaaatttactattttggaaattcaaa |
18154186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 15278615 - 15278811
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||| | | |
|
|
| T |
15278615 |
agacgcaagtaaaacggtggcagacatttggaggttttatatattctgacaa--tggtattagccttgttgagaaaacttttcacaagcatctagaac-t |
15278711 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtag--aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
15278712 |
tgaccagctaggtgtagtcttgggtagaaaaaaaggctaagtgtcttgttattaggaata-tatttttttgatgtaaaatttactattttggaaattcaa |
15278810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 34514049 - 34513868
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
34514049 |
gtggtgcacatttggaggcttgatatattccgacag--tggtattagccttgttgagaaaacatttcacatgcatccggaactttgaccagctaggtgta |
34513952 |
T |
|
| Q |
132 |
ctgttggg-tagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
| ||||| ||||||||| | || ||||||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
34513951 |
gtcttggggtagaaaaagaccaaatgtcttgatattaggaatattatacttttgttgtaaaatttattattttggaaattcaaa |
34513868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 34517117 - 34516990
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
34517117 |
gtggtgcacatttggaggcttgatatattccgacac--tggtattagccttgttgagaaaacttttcacatgcatccggtactttgaccagctaggtgta |
34517020 |
T |
|
| Q |
132 |
ctgttgggtagaaaaaggctaagtgtcttg |
161 |
Q |
| |
|
| |||||||||||||| | || ||||||| |
|
|
| T |
34517019 |
gtcttgggtagaaaaagaccaaatgtcttg |
34516990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 3510548 - 3510729
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
3510548 |
gtggtgcacatttggaggcttgatatattccgacat--tggtattaaccttgttgagaaaacttttcacaagcatctagaactttg---agctaggtgta |
3510642 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattata-----ttattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
| || |||| ||||||||| ||||||||||| |||||| |||||||| || || |||||||||||||||||| ||||||||| |
|
|
| T |
3510643 |
gtcttaggtaggaaaaaggc-aagtgtcttgttattagggatattatatatttttttttttgtaaaatttactattttagaaattcaa |
3510729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 8910823 - 8910984
Alignment:
| Q |
25 |
taaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagct |
124 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||| ||||| | |||||||| ||||||| |||||||||| |||||||||||| || ||||||| | |
|
|
| T |
8910823 |
taaaacagtggtgcatatttggagacttgatatattatgacac--tagtattagccttgttga-aaaacttttcgcaagcatccagaactatgaccagat |
8910919 |
T |
|
| Q |
125 |
aggtgtactgttgggtagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgta |
189 |
Q |
| |
|
|||| || | ||||||||||||||| ||||||||||| ||| |||||||||||| || ||||| |
|
|
| T |
8910920 |
aggtttagtcttgggtagaaaaaggacaagtgtcttgttcttaagaatattatattttttatgta |
8910984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 2039775 - 2039973
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2039775 |
agacgcaagtaaaacggtggcacacattcggaggcttgatatattccgacac--tggtattaaccttgttgagaaaacttttcacaagcatccagaactt |
2039872 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtag--aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
|||||||||||||||| | || ||||| ||||| || ||| | |||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2039873 |
tgaccagctaggtgtagtcttaggtaggaaaaaaagccaagagccttgctattaggaataatatatttttgatgtaaaatttactattttggaaattcaa |
2039972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 29962375 - 29962262
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
29962375 |
agacgcaagtaaaacagtggggcacattcggaggcttgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatctagaactt |
29962278 |
T |
|
| Q |
116 |
tgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29962277 |
tgaccagctaggtgta |
29962262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 2584380 - 2584334
Alignment:
| Q |
81 |
ttgttgagaaaacttttcacaagcatccagagctttgaccagctagg |
127 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
2584380 |
ttgttgaaaaaacttttcacaagcatccacaactatgaccagctagg |
2584334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 52945608 - 52945804
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||| ||||| || || ||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52945608 |
agacgcacgtgaaatggtggtgcacatttggaggcttgatttactctgacac--tggtattagccttgttgagaaaacttttcacaagcatccagaactt |
52945705 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtagaaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
||| | ||| ||||| | || |||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||| |||||||||||||||| |
|
|
| T |
52945706 |
cgacgacctaagtgtagtattaggtagaaaaaggtcaagtgtcttgttattaggaatattatattttttacgtaaaatttacaattttggaaattcaaa |
52945804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 28653747 - 28653561
Alignment:
| Q |
31 |
ggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctag---- |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28653747 |
ggtggtgcacatttggaggtttgatatattccgacaa--tggtattagccttgttaaaaaaacttttcacaagcatccagaactttgaccagctagctag |
28653650 |
T |
|
| Q |
127 |
gtgtactgttgggtag-aaaaaggctaagtgtcttgtaattaggaatattatattattgatgtaaaatttactattttggaaattcaaa |
214 |
Q |
| |
|
||||| | |||||||| |||||||| ||||||||||| |||||| ||| |||||| || ||||||||||||||| ||| |||||||||| |
|
|
| T |
28653649 |
gtgtagtcttgggtaggaaaaaggccaagtgtcttgttattagggataatatattttttatgtaaaatttactactttagaaattcaaa |
28653561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 11141 - 11318
Alignment:
| Q |
32 |
gtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctttgaccagctaggtgta |
131 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
11141 |
gtggtgcacatttggaggctcgatatattccgacac--tggtattagccttgttgagaaaacttttcacaagcatctagaactttg---agctaggtgta |
11235 |
T |
|
| Q |
132 |
ctgttgggta-gaaaaaggctaagtgtcttgtaattaggaatattata-ttattgatgtaaaatttactattttggaaattcaa |
213 |
Q |
| |
|
| || |||| ||||||||| ||||||||||| |||||| |||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
11236 |
gtcttaggtaggaaaaaggc-aagtgtcttgttattagggatattatatttttttatgtaaaatttactattttggaaattcaa |
11318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 8336 - 8466
Alignment:
| Q |
16 |
agacgcaagtaaaacggtggtgcacatttggaggtttgatatattccgacacactggtattagctttgttgagaaaacttttcacaagcatccagagctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||| || ||||||||||||||||||||||||| || || |
|
|
| T |
8336 |
agacgcaagtaaaacggtggtgcacatttagagacttgatatattccgacac--tgatattagccttcttgagaaaacttttcacaagcatccggaacta |
8433 |
T |
|
| Q |
116 |
tgaccagctaggtgtactgttgggtagaaaaag |
148 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||| |
|
|
| T |
8434 |
tgaccagttaggtttactcttgggtagaaaaag |
8466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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