View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13783_low_4 (Length: 598)

Name: NF13783_low_4
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13783_low_4
NF13783_low_4
[»] chr8 (18 HSPs)
chr8 (247-590)||(30648690-30649030)
chr8 (18-182)||(30649095-30649259)
chr8 (247-441)||(26089181-26089375)
chr8 (18-182)||(26089440-26089604)
chr8 (296-438)||(14727714-14727856)
chr8 (333-472)||(27714265-27714404)
chr8 (295-438)||(29552745-29552888)
chr8 (295-439)||(15329808-15329952)
chr8 (295-439)||(15510177-15510321)
chr8 (295-439)||(28865902-28866046)
chr8 (311-442)||(28693166-28693298)
chr8 (532-590)||(14727553-14727611)
chr8 (532-582)||(26089061-26089111)
chr8 (350-447)||(24509272-24509369)
chr8 (536-590)||(15329657-15329711)
chr8 (536-590)||(15510026-15510080)
chr8 (536-590)||(28865754-28865808)
chr8 (550-591)||(31073808-31073849)
[»] chr7 (5 HSPs)
chr7 (335-442)||(6610910-6611017)
chr7 (295-437)||(17292620-17292762)
chr7 (535-586)||(6611092-6611143)
chr7 (115-164)||(6610681-6610730)
chr7 (537-589)||(17292862-17292914)
[»] chr3 (2 HSPs)
chr3 (295-447)||(4819858-4820010)
chr3 (536-589)||(4819716-4819769)
[»] chr1 (2 HSPs)
chr1 (258-442)||(26086364-26086548)
chr1 (532-587)||(26086638-26086693)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 247 - 590
Target Start/End: Complemental strand, 30649030 - 30648690
Alignment:
Q  247 gaattcataccctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcacta 346  Q
    ||||||||| |||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649030 gaattcataacctgacaagactgatttcccagcatttcctggg---gcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcacta 30648934  T
Q  347 acctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctaata 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30648933 acctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctgata 30648834  T
Q  447 tgtctcttgtaatgcgatctatataaattcccagagcacctataattgtgatctttgatcttattctatgatcaaatgatggataatcagtgacttccaa 546  Q
    | |||| | ||||||||| ||||||||||  || |||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||  |    
T  30648833 tatctcctctaatgcgatttatataaattgtcacagcacctatagttgtgatctttgatcttattctatgatcacatgtgggataatcagtgacttctga 30648734  T
Q  547 gctaggttttgctccaacacttaataatatactcttgatctctg 590  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  30648733 gctaggttttgttccaacacttaataatatactcttgatctctg 30648690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 30649259 - 30649095
Alignment:
Q  18 caacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggactaataaaatcacggaattgacatatgtaggggatatcctccacatagaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30649259 caacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggacgaataaaatcacggaattgacatgtgtaggggatatcctccacatagaaaa 30649160  T
Q  118 taaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649159 taaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta 30649095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 247 - 441
Target Start/End: Complemental strand, 26089375 - 26089181
Alignment:
Q  247 gaattcataccctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattggaggaagtgatgttcgtgttagtg---tcaccagca 343  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    | |||||| ||| ||||||||||||||||||||     | ||   |||| ||||    
T  26089375 gaattcatatcctgacaaaacagatttcccagcatttcctgga---gtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagca 26089279  T
Q  344 ctaacctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctc 441  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  26089278 ctaacctgataaattccactagggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctcctc 26089181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 26089604 - 26089440
Alignment:
Q  18 caacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggactaataaaatcacggaattgacatatgtaggggatatcctccacatagaaaa 117  Q
    |||||||||||||||||||||||| ||||| || ||||| ||||||||  |||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  26089604 caacaatgacgtcaatcaccatggctaacataaatgaactaaaaaggatgaataaaataatggaattgacatgtgtaggggatatcctccacatagaaaa 26089505  T
Q  118 taaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta 182  Q
    |||||| ||| |||||| ||| | |||||||||  | |||||||| | |||||||||||||||||    
T  26089504 taaatagctaacggtaagccatctcattggagaggctactagaaaccctatttttccatatggta 26089440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 296 - 438
Target Start/End: Complemental strand, 14727856 - 14727714
Alignment:
Q  296 gaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggcag 395  Q
    ||||| ||| ||||||||||||||||||||   ||| ||||||||||||||| |||||||| ||||||||||||||||||  ||||||| || |||||||    
T  14727856 gaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaaactgattggtacatggcag 14727757  T
Q  396 tcgcaacaagagtcgcaactatcaaccaagtgttacgttgctc 438  Q
    | |||| |||||| || |||||||||||| |||| ||||||||    
T  14727756 ttgcaataagagtggcgactatcaaccaaatgttgcgttgctc 14727714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 333 - 472
Target Start/End: Complemental strand, 27714404 - 27714265
Alignment:
Q  333 tgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacg 432  Q
    |||||| |||| |||||||||||| |||||||  |||| ||||| |||||||||| ||||| || |||||||||||||||||||||| ||||||||| ||    
T  27714404 tgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacatggctgttgcaacaagagtcgcaactatcatccaagtgttgcg 27714305  T
Q  433 ttgctcctctaatatgtctcttgtaatgcgatctatataa 472  Q
    ||||||||||||||  ||  || ||||||||| |||||||    
T  27714304 ttgctcctctaatacatcatttctaatgcgatttatataa 27714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 438
Target Start/End: Complemental strand, 29552888 - 29552745
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| ||||||||||||||||||||   ||  |||||| |||| |||||||||||| ||||||||||||||| | | ||||||||||| |||||    
T  29552888 agaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggtggca 29552789  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctc 438  Q
    ||| ||||||| |  ||||||||||||  |||||||||||||||    
T  29552788 gtcacaacaagggctgcaactatcaacatagtgttacgttgctc 29552745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 15329952 - 15329808
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||||||||| |||||||| |||||||||||||||||    |||||  || |||| |    
T  15329952 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtacatggta 15329853  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcc 439  Q
    || |||| ||||||||||||||  ||||||| |||||||| ||||    
T  15329852 gttgcaataagagtcgcaactactaaccaagcgttacgttcctcc 15329808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 15510321 - 15510177
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||||||||| |||||||| |||||||||||||||||    |||||  || |||| |    
T  15510321 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtacatggta 15510222  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcc 439  Q
    || |||| ||||||||||||||  ||||||| |||||||| ||||    
T  15510221 gttgcaataagagtcgcaactactaaccaagcgttacgttcctcc 15510177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 28866046 - 28865902
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||| ||||| |||||||| |||||||||||||||||    |||||   | |||| |    
T  28866046 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccagggggactcagagttgattcgaacatggta 28865947  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcc 439  Q
    || |||| ||||||||||||||  |||||||||||||||| ||||    
T  28865946 gttgcaataagagtcgcaactactaaccaagtgttacgttcctcc 28865902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 28693166 - 28693298
Alignment:
Q  311 gaggaagtgatgttcgtgttagtgtcaccagcact-aacctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtc 409  Q
    |||||||||||||||   ||| ||||||||||||| || |||||||||||||||||||||  |||   |||||| | | |||| ||| |||| |||||||    
T  28693166 gaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcagagctgattcaaacatggtagttgcaataagagtc 28693265  T
Q  410 gcaactatcaaccaagtgttacgttgctcctct 442  Q
    || ||||| |||||| |||| ||||| ||||||    
T  28693266 gcgactattaaccaaatgttgcgttgatcctct 28693298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 14727611 - 14727553
Alignment:
Q  532 atcagtgacttccaagctaggttttgctccaacacttaataatatactcttgatctctg 590  Q
    ||||| |||||| | |||| ||||||||||||||||||||||||||||||| |||||||    
T  14727611 atcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctg 14727553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 582
Target Start/End: Complemental strand, 26089111 - 26089061
Alignment:
Q  532 atcagtgacttccaagctaggttttgctccaacacttaataatatactctt 582  Q
    |||||||| ||| | ||||||||||||||||| ||||||||||||||||||    
T  26089111 atcagtgatttctatgctaggttttgctccaaaacttaataatatactctt 26089061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 447
Target Start/End: Complemental strand, 24509369 - 24509272
Alignment:
Q  350 tgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctaatat 447  Q
    ||||||| ||| ||||||||| | | | ||| ||||||| | || || ||||| || |||||||| |||||||||||| | |||||||||||||||||    
T  24509369 tgataaaatccgccagggggatttagtactgtttgataggtcgctgttgcaacgagggtcgcaacaatcaaccaagtgctgcgttgctcctctaatat 24509272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 15329711 - 15329657
Alignment:
Q  536 gtgacttccaagctaggttttgctccaacacttaataatatactcttgatctctg 590  Q
    |||||||| ||||| |||||||  ||| |||| ||||||||||||||||||||||    
T  15329711 gtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctg 15329657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 15510080 - 15510026
Alignment:
Q  536 gtgacttccaagctaggttttgctccaacacttaataatatactcttgatctctg 590  Q
    |||||||| ||||| |||||||  ||| |||| ||||||||||||||||||||||    
T  15510080 gtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctg 15510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 28865808 - 28865754
Alignment:
Q  536 gtgacttccaagctaggttttgctccaacacttaataatatactcttgatctctg 590  Q
    |||||||| ||||| ||||||| |||| |||| |||||||||||||| |||||||    
T  28865808 gtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctg 28865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 31073808 - 31073849
Alignment:
Q  550 aggttttgctccaacacttaataatatactcttgatctctgc 591  Q
    ||||||||||||| |||||| |||||||| ||||||||||||    
T  31073808 aggttttgctccagcacttagtaatatacccttgatctctgc 31073849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 6610910 - 6611017
Alignment:
Q  335 tcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgtt 434  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |    
T  6610910 tcaccaacactaacctgataaattccaccaggaggactcaatcctgattgatagatggcagttgcaacgagagtcgcaattatcaaccaagtgttacggt 6611009  T
Q  435 gctcctct 442  Q
     |||||||    
T  6611010 tctcctct 6611017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 295 - 437
Target Start/End: Original strand, 17292620 - 17292762
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| ||||| |||||||| |||||   ||| |||||| || ||||||||||||||  ||||||  |||| | |    |||||||||| ||||     
T  17292620 agaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacaccaccaacgggagttagcgttgattgataggtggct 17292719  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgct 437  Q
    || |||||||||||||||| ||||||||||||||| |||||||    
T  17292720 gttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct 17292762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 6611092 - 6611143
Alignment:
Q  535 agtgacttccaagctaggttttgctccaacacttaataatatactcttgatc 586  Q
    ||||||||| |||||||||||||||||||| || ||||| ||||||||||||    
T  6611092 agtgacttctaagctaggttttgctccaactctgaataacatactcttgatc 6611143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 6610681 - 6610730
Alignment:
Q  115 aaataaataactagcggtaaaccaacccattggagaacccactagaaagc 164  Q
    |||||||| ||||||| | |||||||||| ||||||| ||||||||||||    
T  6610681 aaataaatgactagcgctgaaccaacccactggagaagccactagaaagc 6610730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 589
Target Start/End: Original strand, 17292862 - 17292914
Alignment:
Q  537 tgacttccaagctaggttttgctccaacacttaataatatactcttgatctct 589  Q
    ||||||| ||||||||||||| |||| |||| ||||| ||||||||| |||||    
T  17292862 tgacttctaagctaggttttgatccagcactaaataagatactcttgttctct 17292914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 295 - 447
Target Start/End: Complemental strand, 4820010 - 4819858
Alignment:
Q  295 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctgattgatagatggca 394  Q
    |||||| ||| |||||| ||| |||||||||    || |||||| |||| |||||||||||| |||||| || |||  || | |||||||| || |||||    
T  4820010 agaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtggca 4819911  T
Q  395 gtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctaatat 447  Q
    || |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4819910 gttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctgatat 4819858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 536 - 589
Target Start/End: Complemental strand, 4819769 - 4819716
Alignment:
Q  536 gtgacttccaagctaggttttgctccaacacttaataatatactcttgatctct 589  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4819769 gtgacttccaagccaggttttgctccaacacttgataatatactcttgatctct 4819716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 442
Target Start/End: Original strand, 26086364 - 26086548
Alignment:
Q  258 ctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaat 357  Q
    ||||||| || ||||||||| |||||||| ||     |||||| ||| ||||||||||||||||||||    || ||||||| ||||||  | ||||||     
T  26086364 ctgacaagacagatttcccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaac 26086463  T
Q  358 tccaccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctct 442  Q
    ||||||||||||| |||   |||||| ||| |||| |||||||| |||||  || ||||| |||||| |||| ||||||||||||    
T  26086464 tccaccagggggagtcagagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctct 26086548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 587
Target Start/End: Original strand, 26086638 - 26086693
Alignment:
Q  532 atcagtgacttccaagctaggttttgctccaacacttaataatatactcttgatct 587  Q
    ||||| |||||||| ||||| |||||||||  | ||||||||||||||||||||||    
T  26086638 atcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatct 26086693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University