View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_low_42 (Length: 211)
Name: NF13783_low_42
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 8107477 - 8107297
Alignment:
| Q |
19 |
ttacctgtgaaattcattacagagaaagagaaagatatttaaaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactgg |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| | |
|
|
| T |
8107477 |
ttacctgtggaattcattacagagaaagagaaagatatttaaaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactag |
8107378 |
T |
|
| Q |
119 |
atggattaaaaaa-tacctttgttaaactccttaacatgttccaattccttcttaaatatttctctacgtttcttcatctc |
198 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||| |
|
|
| T |
8107377 |
atagataaaaaaattacctttgttaaactccttaacatgttccaatttcttcttgaatagttctcgacgtttcttcatctc |
8107297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 8112122 - 8111942
Alignment:
| Q |
19 |
ttacctgtgaaattcattacagagaaagagaaagatatttaaaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactgg |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| | |
|
|
| T |
8112122 |
ttacctgtggaattcattacagagaaagagaaagatatttaaaatactactaacaatcgataatctcatcgattattgaattgaaacttaaacaaactag |
8112023 |
T |
|
| Q |
119 |
atggattaaaaaa-tacctttgttaaactccttaacatgttccaattccttcttaaatatttctctacgtttcttcatctc |
198 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||| |
|
|
| T |
8112022 |
atagataaaaaaattacctttgttaaactccttaacatgttccaatttcttcttgaatagttctcgacgtttcttcatctc |
8111942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 8093817 - 8093698
Alignment:
| Q |
19 |
ttacctgtgaaattcattacagagaaagagaaagatatttaaaatactactaacaactgataatctgatcgattattgaattgaatctaaaacaaactgg |
118 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||| |||||||||||| ||||| | |||| || ||||||||||||||| || | |||| || |
|
|
| T |
8093817 |
ttacctgcgaaattcattacaatgaaagataaagatacttaaaatactacatacaac---tcatctcattgattattgaattgaaactga---aaaccgg |
8093724 |
T |
|
| Q |
119 |
atggattaaaaaatacctttgttaaa |
144 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
8093723 |
atggataaaaaaatacctttgttaaa |
8093698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 30879172 - 30879230
Alignment:
| Q |
138 |
tgttaaactccttaacatgttccaattccttcttaaatatttctctacgtttcttcatc |
196 |
Q |
| |
|
||||||||| || || ||||||||||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
30879172 |
tgttaaacttctcaagatgttccaatttcttcttgagtatttctctacatttcttcatc |
30879230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University