View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13783_low_5 (Length: 515)
Name: NF13783_low_5
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 49423773 - 49424250
Alignment:
| Q |
13 |
tgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423773 |
tgttatccctaatgtcttgaaagttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttc |
49423872 |
T |
|
| Q |
113 |
cccaaatggcttgttaagacagttcaaaagcttgattctcatttccattattttttgaatttattagacctataagacgtgagtttctcggttctccaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423873 |
cccaaatggcttgttaagacagttcaaaagcttgattctcatt-ccattattttttgaatttattagacctataagacgtgagtttctcggttctccaca |
49423971 |
T |
|
| Q |
213 |
ggcatactaagtattcaaggagcagttgatacaaacctgtcattagtaatctggaaaatcacccgactcatggaaccagcagggagcggtcctctccgta |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| ||||| || ||| ||| |||||||| |
|
|
| T |
49423972 |
ggcatactaagtattcaaggagcagttgatacaaacctgtcattagtaatctggataatcgctccattcatgaaaccaccatggaacggaagtctccgta |
49424071 |
T |
|
| Q |
313 |
agcgccatccaagtagcgtgggaaccacgagccttgctagattcatcttttgatttgaagtctattcatgatgattcccttagtttatgattagtaattt |
412 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424072 |
agcgccatccaagttgcaccagaaccacgagccttgctagattcatcttttgatttgaagtctattcatgatgattcccttagtttatgattagtaattt |
49424171 |
T |
|
| Q |
413 |
agtagtctttaaaaatataattccaactaatttacataaattcctttgatgaattctctgtgtctagatcggttatttc |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424172 |
agtagtctttaaaaatataattccaactaatttacataaattcctttgatgaattctctgtgtctagatcggttatttc |
49424250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 49425932 - 49426060
Alignment:
| Q |
16 |
tatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttcccc |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| | || |||||||| | ||||||||| |||||||| ||| ||||||||| |||||| |
|
|
| T |
49425932 |
tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttcccc |
49426031 |
T |
|
| Q |
116 |
aaatggcttgttaagacagttcaaaagct |
144 |
Q |
| |
|
||||| | ||||||||||||||||||| |
|
|
| T |
49426032 |
aaatgattcattaagacagttcaaaagct |
49426060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 43363288 - 43363148
Alignment:
| Q |
13 |
tgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttc |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||||| | | |||||||| || |||||||||||||| | ||||||| |||||||||| |
|
|
| T |
43363288 |
tgttatcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttc |
43363191 |
T |
|
| Q |
113 |
cccaaatggcttgttaagacagttcaaaagcttgattctcatt |
155 |
Q |
| |
|
|||||||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
43363190 |
cccaaatgactcattaagacaattcaaaaacttccttctcatt |
43363148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 49424280 - 49424326
Alignment:
| Q |
469 |
tctgtgtctagatcggttatttcacactggtgacaattttaaaatta |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424280 |
tctgtgtctagatcggttatttcacactggtgacaattttaaaatta |
49424326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 17640992 - 17641030
Alignment:
| Q |
14 |
gttatccctaatgtcttgaaagttgaatctatcaaccat |
52 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17640992 |
gttatccctaaattcttgaaagttgaatctatcaaccat |
17641030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University