View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13783_low_6 (Length: 468)
Name: NF13783_low_6
Description: NF13783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13783_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 108 - 373
Target Start/End: Original strand, 48568644 - 48568909
Alignment:
| Q |
108 |
ttgttatcaagatatttaagtttaatttttcatgtatccttcagtatttaaggatgtcttcttagaaatgctatacatgtgtcagttctaacttggaaat |
207 |
Q |
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| T |
48568644 |
ttgttatcaagatatttaagtttaatttttcatgtatccttcagtatttaaggatgtattcttagaaatgctatacatgtgtcagttttaacttggaaat |
48568743 |
T |
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| Q |
208 |
acacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattatttcagtcaattttgctagacaaattaat |
307 |
Q |
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| T |
48568744 |
acacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattatttcagtcaattttgctagacaaattaat |
48568843 |
T |
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| Q |
308 |
taggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
373 |
Q |
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| T |
48568844 |
taggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
48568909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 48568494 - 48568587
Alignment:
| Q |
17 |
agaaagtgtccattttctttggctcggtgtttatataaatgttcttaatcaggggttatttagcttgttatatattcacttaccttttctattg |
110 |
Q |
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| T |
48568494 |
agaaagtgtccattttctttggctcggtgtttatataaatgttcttaatcaggggttatttagcttgttatatattcacttaccttttctattg |
48568587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 48568936 - 48569030
Alignment:
| Q |
376 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggca |
468 |
Q |
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| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggca |
48569030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 10822347 - 10822255
Alignment:
| Q |
378 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggca |
468 |
Q |
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| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggca |
10822255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 468
Target Start/End: Original strand, 36145048 - 36145141
Alignment:
| Q |
377 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggca |
468 |
Q |
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| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggca |
36145141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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