View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13784_high_2 (Length: 296)
Name: NF13784_high_2
Description: NF13784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13784_high_2 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 44300467 - 44300737
Alignment:
| Q |
18 |
aaatcgattaatgatttttatgcttaatagattctcttgtttaataatcacggttcattgaaattgaaaattgattattgttcgaatggatcagggattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44300467 |
aaatcgattaatgatttttatgcttaatagattctcttttttaataatcacggttcattgaa--------ttgattattgttcgaatggatcagggattc |
44300558 |
T |
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| Q |
118 |
cgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300559 |
cgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaac |
44300658 |
T |
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| Q |
218 |
acctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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| T |
44300659 |
acctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
44300737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 101 - 296
Target Start/End: Original strand, 99812 - 100007
Alignment:
| Q |
101 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
200 |
Q |
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| T |
99812 |
gaatggatcaaggattccgtggacggatgaagagcacaagttgttttcggttggattgcagaaagttgataaaggtgattggagaggaatctcaaggaac |
99911 |
T |
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| Q |
201 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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| T |
99912 |
tatgtgaaaacaagaacgcctatgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagt |
100007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 101 - 296
Target Start/End: Original strand, 38404222 - 38404417
Alignment:
| Q |
101 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38404222 |
gaatggatcaaggattccgtggacggaggaagagcacaagttgttttcggttggattgcagaaagttgacaaaggtgattggagaggaatctcaaggaac |
38404321 |
T |
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| Q |
201 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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| T |
38404322 |
tatgtgaaaacaagaacgccttcgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatcgcaattgctgtcgccatagatccagt |
38404417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 33814196 - 33814368
Alignment:
| Q |
101 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| | | |||||| |||| |||||||||||||| |
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| T |
33814196 |
gaatggatcagggattccgtgcacggaggaagagcacaagctgtttttggttggattgcagaaagttggcatatgtgattagagaagaatctcaaggaac |
33814295 |
T |
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| Q |
201 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgt |
281 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
33814296 |
tatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33814368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 33873666 - 33873838
Alignment:
| Q |
101 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| | | |||||| |||| |||||||||||||| |
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| T |
33873666 |
gaatggatcagggattccgtgcacggaggaagagcacaagctgtttttggttggattgcagaaagttggcatatgtgattagagaagaatctcaaggaac |
33873765 |
T |
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| Q |
201 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgt |
281 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
33873766 |
tatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33873838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 16190123 - 16190304
Alignment:
| Q |
115 |
ttccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaag |
214 |
Q |
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|||| ||||| || ||||| || |||||||||||| | |||||||| ||||||| |||||||||||||||||||| || || |||| ||||||||| || |
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| T |
16190123 |
ttccttggacagaagaagaacacaagttgttcttgttgggattgcaacaagttggtaaaggtgattggagaggaatttctagaaactttgtgaaaactag |
16190222 |
T |
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| Q |
215 |
aacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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||||| || |||||||||||||||||||| ||||| || |||||||| ||| | |||||||| ||||| ||||||||| |
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| T |
16190223 |
gacaccaactcaggttgcaagtcatgctcagaagtatttcctccgccgtcataaccagaatcgccgccgccggagatccagt |
16190304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 36236242 - 36236179
Alignment:
| Q |
233 |
aagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
36236242 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagt |
36236179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 31232234 - 31232297
Alignment:
| Q |
233 |
aagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgccgtagatccagt |
296 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
31232234 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagt |
31232297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 34848442 - 34848526
Alignment:
| Q |
166 |
ttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
250 |
Q |
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|||||||||| |||||||| || ||||| || |||||||||| ||||||||||| || || |||||||| |||||||||||||| |
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| T |
34848442 |
ttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagta |
34848526 |
T |
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